(Translated by https://www.hiragana.jp/)
HEADER TRANSFERASE 26-OCT-09 3KEX
TITLE CRYSTAL STRUCTURE OF THE CATALYTICALLY INACTIVE KINASE DOMAIN OF THE
TITLE 2 HUMAN EPIDERMAL GROWTH FACTOR RECEPTOR 3 (HER3)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: RECEPTOR TYROSINE-PROTEIN KINASE ERBB-3;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: UNP RESIDUES 698-1019;
COMPND 5 SYNONYM: C-ERBB3, TYROSINE KINASE-TYPE CELL SURFACE RECEPTOR HER3;
COMPND 6 EC: 2.7.10.1;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: ERBB3, ERBB3/HER3, HER3;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBACHTA
KEYWDS KINASE DOMAIN, INACTIVE KINASE, HER3, ERBB3, ATP-BINDING, CELL
KEYWDS 2 MEMBRANE, KINASE, MEMBRANE, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN,
KEYWDS 3 RECEPTOR, TRANSFERASE, TYROSINE-PROTEIN KINASE
EXPDTA X-RAY DIFFRACTION
AUTHOR N.JURA,Y.SHAN,X.CAO,D.E.SHAW,J.KURIYAN
REVDAT 5 03-APR-24 3KEX 1 REMARK
REVDAT 4 21-FEB-24 3KEX 1 REMARK SEQADV LINK
REVDAT 3 01-NOV-17 3KEX 1 REMARK
REVDAT 2 02-FEB-10 3KEX 1 JRNL
REVDAT 1 22-DEC-09 3KEX 0
JRNL AUTH N.JURA,Y.SHAN,X.CAO,D.E.SHAW,J.KURIYAN
JRNL TITL STRUCTURAL ANALYSIS OF THE CATALYTICALLY INACTIVE KINASE
JRNL TITL 2 DOMAIN OF THE HUMAN EGF RECEPTOR 3.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 21608 2009
JRNL REFN ISSN 0027-8424
JRNL PMID 20007378
JRNL DOI 10.1073/PNAS.0912101106
REMARK 2
REMARK 2 RESOLUTION. 2.80 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.46
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.930
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2
REMARK 3 NUMBER OF REFLECTIONS : 17472
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.243
REMARK 3 R VALUE (WORKING SET) : 0.241
REMARK 3 FREE R VALUE : 0.283
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120
REMARK 3 FREE R VALUE TEST SET COUNT : 894
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 46.4700 - 5.0810 0.53 2883 158 0.2330 0.2440
REMARK 3 2 5.0810 - 4.0340 0.52 2804 154 0.2030 0.2610
REMARK 3 3 4.0340 - 3.5240 0.52 2807 147 0.2230 0.2780
REMARK 3 4 3.5240 - 3.2020 0.52 2781 145 0.2600 0.3030
REMARK 3 5 3.2020 - 2.9730 0.51 2741 147 0.3080 0.3770
REMARK 3 6 2.9730 - 2.7970 0.48 2562 143 0.3300 0.3720
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : 0.32
REMARK 3 B_SOL : 61.62
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 62.94
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.10
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -27.57300
REMARK 3 B22 (A**2) : 16.17300
REMARK 3 B33 (A**2) : 11.40000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.72000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.004 4691
REMARK 3 ANGLE : 0.833 6377
REMARK 3 CHIRALITY : 0.050 702
REMARK 3 PLANARITY : 0.003 800
REMARK 3 DIHEDRAL : 17.924 1767
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : 1
REMARK 3 NCS GROUP : 1
REMARK 3 NCS OPERATOR : 1
REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 677:846 OR RESSEQ
REMARK 3 851:955 )
REMARK 3 SELECTION : CHAIN B AND (RESSEQ 677:844 OR RESSEQ
REMARK 3 852:955 )
REMARK 3 ATOM PAIRS NUMBER : 2123
REMARK 3 RMSD : 0.016
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 3KEX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-09.
REMARK 100 THE DEPOSITION ID IS D_1000055906.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 05-APR-09
REMARK 200 TEMPERATURE (KELVIN) : 298
REMARK 200 PH : 8.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALS
REMARK 200 BEAMLINE : 8.2.1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : KOHZU DOUBLE CRYSTAL, SI(111)
REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111)
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17502
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2
REMARK 200 DATA REDUNDANCY : 3.600
REMARK 200 R MERGE (I) : 0.10100
REMARK 200 R SYM (I) : NULL
REMARK 200 FOR THE DATA SET : 6.9000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90
REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0
REMARK 200 DATA REDUNDANCY IN SHELL : 3.20
REMARK 200 R MERGE FOR SHELL (I) : 0.55300
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 FOR SHELL : 1.700
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER 2.1.1
REMARK 200 STARTING MODEL: INACTIVE EGFR KINASE DOMAIN
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 49.75
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 5MM AMP-PNP, 2MM MGCL2, 1MM DTT, 1MM
REMARK 280 TCEP, 0.1M TRIS PH8.5, 0.2M LITHIUM SULFATE, 25% W/V PEG 3350
REMARK 280 SUPPLEMENTED WITH 0.2% W/V 1,2- DIAMINOCYCLOHEXANE SULFATE, 0.2%
REMARK 280 W/V DILOXANITE FUROATE, 0.2% W/V FUMARIC ACID, 0.2% W/V SPERMINE,
REMARK 280 0.2% W/V SULFAGUANIDINE, 0.02M HEPES SODIUM PH 6.8, VAPOR
REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 97.08200
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.81850
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 97.08200
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.81850
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 4060 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 26900 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 3110 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 27850 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 97.08200
REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 23.81850
REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 676
REMARK 465 ALA A 677
REMARK 465 MET A 678
REMARK 465 TYR A 849
REMARK 465 SER A 850
REMARK 465 GLU A 851
REMARK 465 ALA A 852
REMARK 465 LYS A 853
REMARK 465 LEU A 976
REMARK 465 THR A 977
REMARK 465 ASN A 978
REMARK 465 LYS A 979
REMARK 465 LYS A 980
REMARK 465 LEU A 981
REMARK 465 GLU A 982
REMARK 465 GLU A 983
REMARK 465 VAL A 984
REMARK 465 GLU A 985
REMARK 465 LEU A 986
REMARK 465 GLU A 987
REMARK 465 PRO A 988
REMARK 465 GLU A 989
REMARK 465 LEU A 990
REMARK 465 ASP A 991
REMARK 465 LEU A 992
REMARK 465 ASP A 993
REMARK 465 LEU A 994
REMARK 465 ASP A 995
REMARK 465 LEU A 996
REMARK 465 GLU A 997
REMARK 465 ALA A 998
REMARK 465 GLU A 999
REMARK 465 GLU A 1000
REMARK 465 GLY B 676
REMARK 465 ALA B 677
REMARK 465 MET B 678
REMARK 465 LEU B 847
REMARK 465 LEU B 848
REMARK 465 TYR B 849
REMARK 465 SER B 850
REMARK 465 GLU B 851
REMARK 465 ALA B 852
REMARK 465 LYS B 853
REMARK 465 SER B 963
REMARK 465 GLY B 970
REMARK 465 PRO B 971
REMARK 465 GLU B 972
REMARK 465 PRO B 973
REMARK 465 HIS B 974
REMARK 465 GLY B 975
REMARK 465 LEU B 976
REMARK 465 THR B 977
REMARK 465 ASN B 978
REMARK 465 LYS B 979
REMARK 465 LYS B 980
REMARK 465 LEU B 981
REMARK 465 GLU B 982
REMARK 465 GLU B 983
REMARK 465 VAL B 984
REMARK 465 GLU B 985
REMARK 465 LEU B 986
REMARK 465 GLU B 987
REMARK 465 PRO B 988
REMARK 465 GLU B 989
REMARK 465 LEU B 990
REMARK 465 ASP B 991
REMARK 465 LEU B 992
REMARK 465 ASP B 993
REMARK 465 LEU B 994
REMARK 465 ASP B 995
REMARK 465 LEU B 996
REMARK 465 GLU B 997
REMARK 465 ALA B 998
REMARK 465 GLU B 999
REMARK 465 GLU B 1000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLU A 712 8.94 -68.64
REMARK 500 SER A 715 -83.00 -79.61
REMARK 500 HIS A 783 -22.15 -158.04
REMARK 500 ARG A 784 -144.55 44.74
REMARK 500 LEU A 792 -2.76 -59.61
REMARK 500 ARG A 814 -7.72 74.78
REMARK 500 ASN A 815 52.21 -151.17
REMARK 500 PRO A 826 -9.92 -59.74
REMARK 500 LEU A 847 96.39 -65.03
REMARK 500 PRO A 965 -163.02 -65.18
REMARK 500 PRO A 971 -178.97 -64.97
REMARK 500 PRO A 973 -166.36 -72.14
REMARK 500 GLU B 712 8.63 -68.27
REMARK 500 SER B 715 -82.85 -79.71
REMARK 500 VAL B 780 4.16 -69.71
REMARK 500 HIS B 783 -23.02 -155.42
REMARK 500 ARG B 784 -144.28 45.97
REMARK 500 LEU B 792 -2.37 -59.16
REMARK 500 ARG B 814 -7.22 74.60
REMARK 500 ASN B 815 52.22 -152.10
REMARK 500 PRO B 826 -9.84 -59.90
REMARK 500 PRO B 842 157.45 -34.88
REMARK 500 ASP B 843 57.48 179.28
REMARK 500 ASP B 844 55.68 -65.04
REMARK 500 GLU B 884 -39.47 -32.10
REMARK 500 LYS B 960 117.96 -38.89
REMARK 500 ILE B 967 83.48 66.51
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A1001 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ANP A 1 O2A
REMARK 620 2 HOH A 17 O 110.2
REMARK 620 3 ASN A 820 OD1 147.2 93.3
REMARK 620 N 1 2
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG B1001 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ANP B 2 O2A
REMARK 620 2 ANP B 2 O3G 96.8
REMARK 620 3 HOH B 21 O 107.0 151.3
REMARK 620 4 HOH B 22 O 82.7 122.5 77.2
REMARK 620 5 ASN B 820 OD1 165.4 68.7 86.5 106.2
REMARK 620 6 ASP B 833 OD2 85.2 54.3 111.1 167.1 84.7
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 1
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1001
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 2
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1001
DBREF 3KEX A 679 1000 UNP P21860 ERBB3_HUMAN 698 1019
DBREF 3KEX B 679 1000 UNP P21860 ERBB3_HUMAN 698 1019
SEQADV 3KEX GLY A 676 UNP P21860 EXPRESSION TAG
SEQADV 3KEX ALA A 677 UNP P21860 EXPRESSION TAG
SEQADV 3KEX MET A 678 UNP P21860 EXPRESSION TAG
SEQADV 3KEX GLY B 676 UNP P21860 EXPRESSION TAG
SEQADV 3KEX ALA B 677 UNP P21860 EXPRESSION TAG
SEQADV 3KEX MET B 678 UNP P21860 EXPRESSION TAG
SEQRES 1 A 325 GLY ALA MET LYS VAL LEU ALA ARG ILE PHE LYS GLU THR
SEQRES 2 A 325 GLU LEU ARG LYS LEU LYS VAL LEU GLY SER GLY VAL PHE
SEQRES 3 A 325 GLY THR VAL HIS LYS GLY VAL TRP ILE PRO GLU GLY GLU
SEQRES 4 A 325 SER ILE LYS ILE PRO VAL CYS ILE LYS VAL ILE GLU ASP
SEQRES 5 A 325 LYS SER GLY ARG GLN SER PHE GLN ALA VAL THR ASP HIS
SEQRES 6 A 325 MET LEU ALA ILE GLY SER LEU ASP HIS ALA HIS ILE VAL
SEQRES 7 A 325 ARG LEU LEU GLY LEU CYS PRO GLY SER SER LEU GLN LEU
SEQRES 8 A 325 VAL THR GLN TYR LEU PRO LEU GLY SER LEU LEU ASP HIS
SEQRES 9 A 325 VAL ARG GLN HIS ARG GLY ALA LEU GLY PRO GLN LEU LEU
SEQRES 10 A 325 LEU ASN TRP GLY VAL GLN ILE ALA LYS GLY MET TYR TYR
SEQRES 11 A 325 LEU GLU GLU HIS GLY MET VAL HIS ARG ASN LEU ALA ALA
SEQRES 12 A 325 ARG ASN VAL LEU LEU LYS SER PRO SER GLN VAL GLN VAL
SEQRES 13 A 325 ALA ASP PHE GLY VAL ALA ASP LEU LEU PRO PRO ASP ASP
SEQRES 14 A 325 LYS GLN LEU LEU TYR SER GLU ALA LYS THR PRO ILE LYS
SEQRES 15 A 325 TRP MET ALA LEU GLU SER ILE HIS PHE GLY LYS TYR THR
SEQRES 16 A 325 HIS GLN SER ASP VAL TRP SER TYR GLY VAL THR VAL TRP
SEQRES 17 A 325 GLU LEU MET THR PHE GLY ALA GLU PRO TYR ALA GLY LEU
SEQRES 18 A 325 ARG LEU ALA GLU VAL PRO ASP LEU LEU GLU LYS GLY GLU
SEQRES 19 A 325 ARG LEU ALA GLN PRO GLN ILE CYS THR ILE ASP VAL TYR
SEQRES 20 A 325 MET VAL MET VAL LYS CYS TRP MET ILE ASP GLU ASN ILE
SEQRES 21 A 325 ARG PRO THR PHE LYS GLU LEU ALA ASN GLU PHE THR ARG
SEQRES 22 A 325 MET ALA ARG ASP PRO PRO ARG TYR LEU VAL ILE LYS ARG
SEQRES 23 A 325 GLU SER GLY PRO GLY ILE ALA PRO GLY PRO GLU PRO HIS
SEQRES 24 A 325 GLY LEU THR ASN LYS LYS LEU GLU GLU VAL GLU LEU GLU
SEQRES 25 A 325 PRO GLU LEU ASP LEU ASP LEU ASP LEU GLU ALA GLU GLU
SEQRES 1 B 325 GLY ALA MET LYS VAL LEU ALA ARG ILE PHE LYS GLU THR
SEQRES 2 B 325 GLU LEU ARG LYS LEU LYS VAL LEU GLY SER GLY VAL PHE
SEQRES 3 B 325 GLY THR VAL HIS LYS GLY VAL TRP ILE PRO GLU GLY GLU
SEQRES 4 B 325 SER ILE LYS ILE PRO VAL CYS ILE LYS VAL ILE GLU ASP
SEQRES 5 B 325 LYS SER GLY ARG GLN SER PHE GLN ALA VAL THR ASP HIS
SEQRES 6 B 325 MET LEU ALA ILE GLY SER LEU ASP HIS ALA HIS ILE VAL
SEQRES 7 B 325 ARG LEU LEU GLY LEU CYS PRO GLY SER SER LEU GLN LEU
SEQRES 8 B 325 VAL THR GLN TYR LEU PRO LEU GLY SER LEU LEU ASP HIS
SEQRES 9 B 325 VAL ARG GLN HIS ARG GLY ALA LEU GLY PRO GLN LEU LEU
SEQRES 10 B 325 LEU ASN TRP GLY VAL GLN ILE ALA LYS GLY MET TYR TYR
SEQRES 11 B 325 LEU GLU GLU HIS GLY MET VAL HIS ARG ASN LEU ALA ALA
SEQRES 12 B 325 ARG ASN VAL LEU LEU LYS SER PRO SER GLN VAL GLN VAL
SEQRES 13 B 325 ALA ASP PHE GLY VAL ALA ASP LEU LEU PRO PRO ASP ASP
SEQRES 14 B 325 LYS GLN LEU LEU TYR SER GLU ALA LYS THR PRO ILE LYS
SEQRES 15 B 325 TRP MET ALA LEU GLU SER ILE HIS PHE GLY LYS TYR THR
SEQRES 16 B 325 HIS GLN SER ASP VAL TRP SER TYR GLY VAL THR VAL TRP
SEQRES 17 B 325 GLU LEU MET THR PHE GLY ALA GLU PRO TYR ALA GLY LEU
SEQRES 18 B 325 ARG LEU ALA GLU VAL PRO ASP LEU LEU GLU LYS GLY GLU
SEQRES 19 B 325 ARG LEU ALA GLN PRO GLN ILE CYS THR ILE ASP VAL TYR
SEQRES 20 B 325 MET VAL MET VAL LYS CYS TRP MET ILE ASP GLU ASN ILE
SEQRES 21 B 325 ARG PRO THR PHE LYS GLU LEU ALA ASN GLU PHE THR ARG
SEQRES 22 B 325 MET ALA ARG ASP PRO PRO ARG TYR LEU VAL ILE LYS ARG
SEQRES 23 B 325 GLU SER GLY PRO GLY ILE ALA PRO GLY PRO GLU PRO HIS
SEQRES 24 B 325 GLY LEU THR ASN LYS LYS LEU GLU GLU VAL GLU LEU GLU
SEQRES 25 B 325 PRO GLU LEU ASP LEU ASP LEU ASP LEU GLU ALA GLU GLU
HET ANP A 1 31
HET MG A1001 1
HET ANP B 2 31
HET MG B1001 1
HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
HETNAM MG MAGNESIUM ION
FORMUL 3 ANP 2(C10 H17 N6 O12 P3)
FORMUL 4 MG 2(MG 2+)
FORMUL 7 HOH *30(H2 O)
HELIX 1 1 THR A 738 SER A 746 1 9
HELIX 2 2 LEU A 776 GLN A 782 1 7
HELIX 3 3 HIS A 783 LEU A 787 5 5
HELIX 4 4 GLN A 790 HIS A 809 1 20
HELIX 5 5 GLY A 835 LEU A 840 5 6
HELIX 6 6 ALA A 860 GLY A 867 1 8
HELIX 7 7 THR A 870 THR A 887 1 18
HELIX 8 8 ALA A 899 LYS A 907 1 9
HELIX 9 9 TYR A 922 TRP A 929 1 8
HELIX 10 10 THR A 938 ALA A 950 1 13
HELIX 11 11 ASP A 952 LEU A 957 1 6
HELIX 12 12 THR B 738 SER B 746 1 9
HELIX 13 13 LEU B 776 GLN B 782 1 7
HELIX 14 14 HIS B 783 LEU B 787 5 5
HELIX 15 15 GLN B 790 HIS B 809 1 20
HELIX 16 16 GLY B 835 LEU B 840 5 6
HELIX 17 17 THR B 854 TRP B 858 5 5
HELIX 18 18 ALA B 860 GLY B 867 1 8
HELIX 19 19 THR B 870 THR B 887 1 18
HELIX 20 20 ALA B 899 LYS B 907 1 9
HELIX 21 21 TYR B 922 TRP B 929 1 8
HELIX 22 22 THR B 938 ALA B 950 1 13
HELIX 23 23 ASP B 952 LEU B 957 1 6
SHEET 1 A 5 LEU A 690 GLY A 697 0
SHEET 2 A 5 THR A 703 TRP A 709 -1 O LYS A 706 N LYS A 694
SHEET 3 A 5 ILE A 718 ILE A 725 -1 O VAL A 720 N GLY A 707
SHEET 4 A 5 LEU A 764 GLN A 769 -1 O THR A 768 N CYS A 721
SHEET 5 A 5 LEU A 755 CYS A 759 -1 N GLY A 757 O VAL A 767
SHEET 1 B 2 VAL A 821 LEU A 823 0
SHEET 2 B 2 VAL A 829 VAL A 831 -1 O GLN A 830 N LEU A 822
SHEET 1 C 5 LEU B 690 SER B 698 0
SHEET 2 C 5 THR B 703 TRP B 709 -1 O LYS B 706 N LYS B 694
SHEET 3 C 5 ILE B 718 ILE B 725 -1 O VAL B 720 N GLY B 707
SHEET 4 C 5 LEU B 764 GLN B 769 -1 O THR B 768 N CYS B 721
SHEET 5 C 5 LEU B 755 CYS B 759 -1 N GLY B 757 O VAL B 767
SHEET 1 D 2 VAL B 821 LEU B 823 0
SHEET 2 D 2 VAL B 829 VAL B 831 -1 O GLN B 830 N LEU B 822
LINK O2A ANP A 1 MG MG A1001 1555 1555 2.23
LINK O HOH A 17 MG MG A1001 1555 1555 2.61
LINK OD1 ASN A 820 MG MG A1001 1555 1555 2.35
LINK O2A ANP B 2 MG MG B1001 1555 1555 2.18
LINK O3G ANP B 2 MG MG B1001 1555 1555 2.88
LINK O HOH B 21 MG MG B1001 1555 1555 2.54
LINK O HOH B 22 MG MG B1001 1555 1555 2.59
LINK OD1 ASN B 820 MG MG B1001 1555 1555 2.25
LINK OD2 ASP B 833 MG MG B1001 1555 1555 2.89
CISPEP 1 THR A 854 PRO A 855 0 -0.14
SITE 1 AC1 20 HOH A 18 HOH A 27 LEU A 696 GLY A 697
SITE 2 AC1 20 SER A 698 GLY A 699 VAL A 700 GLY A 702
SITE 3 AC1 20 VAL A 704 CYS A 721 LYS A 723 GLN A 769
SITE 4 AC1 20 TYR A 770 LEU A 771 ASN A 815 ARG A 819
SITE 5 AC1 20 ASN A 820 LEU A 822 ASP A 833 MG A1001
SITE 1 AC2 4 ANP A 1 HOH A 17 ASN A 820 ASP A 833
SITE 1 AC3 21 HOH B 22 HOH B 25 HOH B 34 LEU B 696
SITE 2 AC3 21 GLY B 697 SER B 698 GLY B 699 VAL B 700
SITE 3 AC3 21 GLY B 702 VAL B 704 CYS B 721 LYS B 723
SITE 4 AC3 21 GLN B 769 TYR B 770 LEU B 771 ASN B 815
SITE 5 AC3 21 ARG B 819 ASN B 820 LEU B 822 ASP B 833
SITE 6 AC3 21 MG B1001
SITE 1 AC4 5 ANP B 2 HOH B 21 HOH B 22 ASN B 820
SITE 2 AC4 5 ASP B 833
CRYST1 194.164 47.637 81.281 90.00 108.04 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.005150 0.000000 0.001678 0.00000
SCALE2 0.000000 0.020992 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012939 0.00000