Antimicrobial resistance monitoring of water environments: a framework for standardized methods and quality control
Antimicrobial resistance (AMR) is a grand societal challenge with important dimensions in
the water environment that contribute to its evolution and spread. Environmental monitoring …
the water environment that contribute to its evolution and spread. Environmental monitoring …
Surveillance of antimicrobial resistance in low-and middle-income countries: a scattered picture
Data on comprehensive population-based surveillance of antimicrobial resistance is lacking.
In low-and middle-income countries, the challenges are high due to weak laboratory …
In low-and middle-income countries, the challenges are high due to weak laboratory …
Environmental factors shaping the gut microbiome in a Dutch population
The gut microbiome is associated with diverse diseases,–, but a universal signature of a
healthy or unhealthy microbiome has not been identified, and there is a need to understand …
healthy or unhealthy microbiome has not been identified, and there is a need to understand …
Assessment of global health risk of antibiotic resistance genes
Z Zhang, Q Zhang, T Wang, N Xu, T Lu, W Hong… - Nature …, 2022 - nature.com
Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health in
the last decade. Many genes can confer resistance, but evaluating the relative health risks of …
the last decade. Many genes can confer resistance, but evaluating the relative health risks of …
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities
Abstract The PathoSystems Resource Integration Center (PATRIC) is the bacterial
Bioinformatics Resource Center funded by the National Institute of Allergy and Infectious …
Bioinformatics Resource Center funded by the National Institute of Allergy and Infectious …
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
Abstract The Comprehensive Antibiotic Resistance Database (CARD; https://card. mcmaster.
ca) is a curated resource providing reference DNA and protein sequences, detection models …
ca) is a curated resource providing reference DNA and protein sequences, detection models …
Stunted microbiota and opportunistic pathogen colonization in caesarean-section birth
Immediately after birth, newborn babies experience rapid colonization by microorganisms
from their mothers and the surrounding environment. Diseases in childhood and later in life …
from their mothers and the surrounding environment. Diseases in childhood and later in life …
Validating the AMRFinder tool and resistance gene database by using antimicrobial resistance genotype-phenotype correlations in a collection of isolates
M Feldgarden, V Brover, DH Haft… - Antimicrobial agents …, 2019 - Am Soc Microbiol
Antimicrobial resistance (AMR) is a major public health problem that requires publicly
available tools for rapid analysis. To identify AMR genes in whole-genome sequences, the …
available tools for rapid analysis. To identify AMR genes in whole-genome sequences, the …
A catalogue of 1,167 genomes from the human gut archaeome
The human gut microbiome plays an important role in health, but its archaeal diversity
remains largely unexplored. In the present study, we report the analysis of 1,167 …
remains largely unexplored. In the present study, we report the analysis of 1,167 …
Towards the biogeography of prokaryotic genes
Microbial genes encode the majority of the functional repertoire of life on earth. However,
despite increasing efforts in metagenomic sequencing of various habitats,–, little is known …
despite increasing efforts in metagenomic sequencing of various habitats,–, little is known …