|  The
European Bioinformatics Institute (EBI) toolbox area
provides a comprehensive range of tools for the field
of bioinformatics. These are subdivided into categories
in the left menu for convenience.
We have developed
a large number of very useful bioinformatics tools.
A few examples include:
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New Clustr Search Released |
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May 25th 2004- Search against the new version of the Clustr database, searches include:
- 109 proteomes, including 10 Eukaryotes
- 180 mln similarities
- 1.6 mln clusters, which includes clustering groups for all of the 109 proteomes separately, as well as for 'Human and Mouse' and 'All against All'
- 462 thousand proteins, including nearly 50 thousand of IPI-only (Human, Mouse and Rat) proteins (i.e. those which don't occur in UniProt).
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July 31st 2003 - SRS3D is an integrated environment that allows the end-user to quickly and
easily retrieve/visualise sequence structure and also feature data from primary, secondary
and tertiary protein databases, is now publicly available from the EBI...more |
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August 12th 2003- WSDbfetch is a webservice
implementation of Dbfetch, a generic DB retrieval
system. It aims to provide programmatic access for sequence
retrieval. more |
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April 17th 2003- '2can Bioinformatics' website contains
simple tutorials on how to use the most common nucleotide/protein
bioinformatics search and analysis tools... more |
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SRS is a powerful data integration platform,
providing rapid, easy and user friendly access to the
large volumes of diverse and heterogeneous Life Science
data stored in more than 400 internal and public domain
databases.
March 5th 2003 - SRS7 Launched. The new datawarehouse has many new features including sorting of query results and more than 100 applications. |
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MSDfold is a powerful interactive tool
for protein structure recognition. In tens of seconds
compare structures submitted as PDB or mmCIF files, or
identified by PDB code . Structures may be easily visualised
using Rasmol
or downloaded as PDB files. |
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The Dali server is a network service
for comparing protein structures in 3D. |
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Providing Web-based tools for microarray
data analysis, Expression Profiler is a set of tools for
clustering, analysis and visualization of gene expression
and other genomic data.
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Other computational services at the EMBL
(in Heidelberg).
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