PRATT 2.1

PRATT is a tool to discover patterns that are conserved in a set of protein sequences. The patterns are reported using the PROSITE format.

This simple interface allows the user to paste a set of sequences that are searched for patterns, using default PRATT parameters. Advanced users may modify the parameters, or are encouraged to use the more advanced EBI PRATT server.

PRATT References:

• Jonassen I., Collins J.F. and Higgins D.;
  Finding flexible patterns in unaligned protein sequences
  Protein Science 4(8):1587-1595(1995)
  PubMed: 8520485
• Jonassen I.;
  Efficient discovery of conserved patterns using a pattern graph
  Comput. Appl. Biosci. 13(5):509-522(1997)
  PubMed: 9367124