| Tuesday 8th October 2013 | |||
| Northern Second Round | |||
| Fleetwood Town | 4-0 | Crewe Alexandra | |
| Mansfield Town | 0-1 | Chesterfield | |
| Morecambe | 0-0 | Carlisle United | |
| (Carlisle United won on penalties) | |||
| Port Vale | 0-1 | Rochdale | |
| Preston North End | 0-2 | Oldham Athletic | |
| Sheffield United | 0-1 | Hartlepool United | |
| Wolverhampton Wndrs | 0-0 | Notts County | |
| (Notts County won on penalties) | |||
| York City | 0-3 | Rotherham United | |
| Southern Second Round | |||
| Crawley Town | 2-3 | Newport County AFC | |
| Leyton Orient | 0-0 | Coventry City | |
| (Leyton Orient won on penalties) | |||
| Oxford United | 1-2 | Portsmouth | |
| Peterborough United | 2-1 | Brentford | |
| Southend United | 2-5 | Dagenham and Redb'ge | |
| Stevenage | 2-1 | Milton Keynes Dons | |
| Swindon Town | 2-1 | Plymouth Argyle | |
| Wycombe Wanderers | 2-1 | Bristol City | |
| Tuesday 12th November 2013 | |||
| Northern Quarter-Final | |||
| Chesterfield | v | Rochdale | 19:45 |
| Fleetwood Town | v | Carlisle United | |
| Hartlepool United | v | Rotherham United | 19:00 |
| Oldham Athletic | v | Notts County | 19:45 |
| Southern Quarter-Final | |||
| Newport County AFC | v | Portsmouth | 19:45 |
| Peterborough United | v | Dagenham and Redb'ge | 19:30 |
| Stevenage | v | Leyton Orient | 19:45 |
| Swindon Town | v | Wycombe Wanderers | 19:45 |
