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UniSTS is a comprehensive database of sequence tagged sites (STSs)
derived from STS-based maps and other experiments.
STSs are defined by PCR primer pairs and are associated with additional
information such as genomic position, genes, and sequences.
Summary of Maps in UniSTS
Organism
Total
Total
Map name
Map title
markers
UniSTSs1
Links2
Acacia mangium
butcher_2000
butcher_2000
247
33
ftp
Allium cepa
Havey_05
Onion Genetic Map
233
35
ftp
Antirrhinum majus
Schwarz-Sommer_10
intraspecific snapdragon
300
135
ftp
Antirrhinum majus x Antirrhinum molle
Schwarz-Sommer_03
2003 interspecific linkage map
239
1
ftp
Apis mellifera
Hunt
Hunt Honeybee Linkage Map 7_25_05
1,155
1
ftp
Solignac_1700
Solignac Genetic Map, 1694 markers
1,636
1,622
ftp
Solignac_3
Solignac Linkage Map (AmelMap3)
2,008
2,007
ftp
Arabidopsis lyrata
lyratap_beaulieu_07
petraea_x_lyrata
105
1
ftp
Arachis duranensis x Arachis stenosperma
SSR_05
diploid peanut, 2005, SSR
170
151
ftp
Avena sativa
AsXAw_00
Diploid Oat, AFLP
509
2
ftp
Avena strigosa x Avena wiestii
As_x_Aw_00
Diploid oat, AFLP
509
3
ftp
Beta vulgaris
McGrath_07
McGrath_07
331
23
ftp
Betula pendula
Pekkinen_06
2006 silver birch linkage map
104
17
ftp
Bombus terrestris
Stolle2
Bombus terrestris Linkage Map
552
303
ftp
Bos taurus
ILTX
5000 Rad Cattle RH Map, 2005 Release
3,484
3,396
ftp
MARC
MARC Bovine Linkage Map
1,419
1,365
ftp
Brassica juncea
Panjabi_08
B. juncea Intron Polymorphism map
723
4
ftp
Brassica napus
BBSRC-SSR
N-o-61-9 SSR map
225
89
ftp
N-fo-72-8
N-fo-72-8
272
5
ftp
bnapus_bin
bnapus_bin
13,567
13
ftp
piquemal_05
B. napus, piquemal_05
363
55
ftp
Brassica oleracea
A12xGD-206_2000
B. oleracea, A12xGD-206_2000
862
4
ftp
Li_2003
Li_2003
246
11
ftp
NxG-97_2000
B. oleracea, NxG-97_2000
434
4
ftp
O_Integrated_2000
B. oleracea, Integrated_2000
1,659
5
ftp
Brassica rapa
choi_07
choi_07
556
4
ftp
park_06
park_06
543
7
ftp
reference_kr2009
reference_kr2009
719
4
ftp
Bubalus bubalis
RH
River buffalo (Bubalus Bubalis) radiation Hybrid map
2,621
796
ftp
Canis lupus familiaris
RHDF5000
Canine 1Mb RH Map
3,092
3,031
ftp
Capsicum annuum x Capsicum frutescens
F_x_A_03
Pepper-FA03
689
2
ftp
Carica papaya
Ming_07
Ming_07
707
691
ftp
Cocos nucifera
RIT1
Cameroon Red Dwarf x Rennell Island Tall-1
236
11
ftp
RIT2
Cameroon Red Dwarf x Rennell Island Tall-2
336
18
ftp
Riedel_2009
East African Tall x Rennell Island Tall, 2009
764
4
ftp
Corylus avellana
Mehlenbacher_2006R
Mehlenbacher, resistant parent
586
9
ftp
Cryptococcus neoformans
Cneo_B3501_B3502
Linkage map of Cryptococcus neoformans var neoformans serotype D
285
279
ftp
Cucumis melo
Gonzalo_2005
merged melon linkage maps
337
60
ftp
Cynara cardunculus var. scolymus
2006_Romanesco_C3
2006 Romanesco C3 genetic map
222
11
ftp
2009_Romanesco_C3
2009 Romensco C3 genetic map
334
45
ftp
Altilis41
2009 Altilis 41 genetic map
210
25
ftp
Spinso
2006 Spinoso genetic map
195
9
ftp
Danio rerio
GAT
Gates Haploid Panel Map
433
304
ftp
HS
Heat Shock Diploid Cross Map
6,070
1,423
ftp
LN54
Loeb/NIH/5000/4000 Map
5,592
3,366
ftp
MGH
Boston MGH Cross Map
3,857
1,980
ftp
MOP
Mother of Pearl Map
703
321
ftp
T51
Goodfellow T51 Map
16,873
5,875
ftp
ZMAP
Zebrafish Genome Integrated Map
32,178
8,351
ftp
Elaeis guineensis
Billotte_05
2005 oil palm microsatellite linkage map
786
231
ftp
Eleusine coracana
Devos_2007
finger millet 2007
330
31
ftp
Equus caballus
RH
Horse radiation hybrid map
3,816
3,813
ftp
Eucalyptus grandis
Grattapaglia_gr_06
Grattapaglia_gr_06
816
197
ftp
Eucalyptus grandis x Eucalyptus urophylla
Grattapaglia_06
eucalyptus_consensus
202
201
ftp
Eucalyptus urophylla
Grattapaglia_ur_06
Grattapaglia_ur_06
160
160
ftp
Felis catus
Genetic
Genetic map of the domestic cat
328
318
ftp
Genetic2009
Cat genetic map 2009
529
529
ftp
RH
Cat radiation hybrid map 2008
2,674
2,674
ftp
Fragaria vesca x Fragaria nubicola
FV_x_FN_2004
Fragaria vesca x Fragria nubicola 2004 genetic
80
35
ftp
FV_x_FN_2006
Fragaria vesca x Fragria nubicola 2006 genetic
185
77
ftp
Gallus gallus
WUR
Wageningen University chicken linkage Map
2,110
960
ftp
Glycine max
2004_SSR
2004 Integrated Genetic Linkage Map
1,848
1,013
ftp
Comp_03
Composite 2003
3,051
1,007
ftp
Comp_99
Composite 1999
2,133
595
ftp
Cregan_03
2003 Integrated Genetic Linkage Map
1,848
1,012
ftp
Helianthus annuus
Al-Chaarani_04
PAC2 x RHA266 RIL Al-Chaarani 2004
395
4
ftp
Alfadil_07
PAC2 x RHA266 RIL Alfadil 2007
444
116
ftp
Burke_02
cmsHA898 x Ann1238 Burke 2002
185
96
ftp
Burke_04
Composite Burke 2004
288
265
ftp
Gandhi_05
NMS373 x ANN1811 BC Gandhi 2005
140
62
ftp
Hopi_x_ANN1238_2007
Hopi x ANN1238_Wills & Burke 2007
43
19
ftp
Hu_06
RHA280 x RAH801 Hu 2006
760
398
ftp
Kiani_07
PAC2 x RHA266 Kiani 2007b
559
135
ftp
Lai_05
RHA280 x RHA801_RIL Lai 2005b
427
176
ftp
PHA_x_PHB_03
PHA x PHB_RIL_Yu et al. 2003
266
233
ftp
Tang_02
RHA280 x RHA801 RIL Tang 2002
459
390
ftp
Tang_03
Composite Tang 2003
658
468
ftp
Tang_06
RHA280 x RAH801 Tang 2006b
171
111
ftp
ril_Yu_03
RHA280 x RHA801 RIL Yu 2003
576
389
ftp
Homo sapiens
GeneMap99-GB4
Human Transcript Map 99
104,388
48,938
ftp
GeneMap99-GB4
Human Transcript Map 99
104,388
48,938
ftp
Genethon
Genethon Human Linkage Map, 1995 release
5,264
5,264
ftp
Marshfield
Marshfield human genetic Map
7,698
7,694
ftp
NCBI RH
Computed integrated panel Map
23,727
23,699
ftp
NHGRI-7
NHGRI chr 7 Physical Map
2,117
2,117
ftp
Stanford-G3
Stanford G3 Map
7,198
7,149
ftp
TNG
Stanford TNG RH Map
36,634
35,608
ftp
WUSTL-X
WashU Chr. X STS Map
1,664
1,662
ftp
Whitehead-RH
Whitehead RH Map, July 1997 release
14,658
14,627
ftp
Whitehead-YAC
Whitehead STS Map, July 1997 release
10,469
10,449
ftp
deCODE
deCODE high resolution genetic Map
5,135
5,012
ftp
Hordeum bulbosum
Hbulbosum_2001
H.bulbosum, PB1 x PB11
138
1
ftp
Hordeum vulgare
B_x_E_1997
Blenheim x E224/3
112
2
ftp
Cons03
Barley Consensus 2003
705
113
ftp
Cons95
Barley consensus
587
5
ftp
Cons96
Barley consensus 2
880
5
ftp
D_x_M
Barley, Dicktoo x Morex
117
1
ftp
I_x_F_00
Barley, Igri x Franka
487
18
ftp
I_x_F_03
Barley, Igri x Franka, SSR
210
9
ftp
L_x_Hs_00
Barley, LxHs
348
232
ftp
L_x_V_06
Barley, L94 x Vada 2006
958
78
ftp
NABGMP00
Barley, HxT
177
2
ftp
NABGMP03
North American Barley Genetic Mapping Project 2003
618
25
ftp
NABGMP93
Barley, SxM
327
1
ftp
OWB_04
Barley, OWB, 2004
205
45
ftp
OWB_96
Barley, OWB
159
31
ftp
P_x_N_95
Barley, PxN
282
4
ftp
S_x_M_SSR
Barley, Steptoe x Morex, SSR
201
30
ftp
T_x_E_2000
Barley, TxE
233
25
ftp
Lolium perenne
Armstead_02
2002 Integrated Genetic Map
167
2
ftp
Lotus japonicus
F_x_G
L. filicaulis x L. japonicus Gifu
172
144
ftp
F_x_G_06
L. filicaulis X L. japonicus Gifu
174
153
ftp
G_x_M
L. japonicus Gifu x L. japonicus MG-20
190
180
ftp
G_x_M_06
L. japonicus Gifu X L. japonicus MG-20
191
184
ftp
Lf_X_Lj_02
Lotus japonicus genetic map
608
45
ftp
Lf_X_Lp_02
Lf_X_Lp_02
607
31
ftp
kazusa_lotus
kazusa_lotus
782
778
ftp
lj_composite_06
lj_composite
914
193
ftp
lj_composite_06
lj_composite
914
193
ftp
Lupinus angustifolius
83A:476_x_P27255_2006
2006 83A:476xP27255
382
122
ftp
Macaca mulatta
RH
First Generation RH Map
801
793
ftp
Manihot esculenta
cassava_F_05
cassava_F_05
205
42
ftp
cassava_M_05
cassava_M_05
139
22
ftp
fregene_2006
fregene_2006
100
42
ftp
Medicago sativa
Julier_composite
Julier_composite
107
76
ftp
cook_alfa_04
cook_alfa_04
181
58
ftp
Medicago truncatula
Davis04
Davis 2004 genetic
297
263
ftp
Davis06
Davis 2006 genetic
539
514
ftp
Minnesota04
Young(U.Minn)2004
542
515
ftp
Minnesota06
Young(U.Minn)2006
1,038
555
ftp
Meleagris gallopavo
UMN
University of Minnesota Turkey Genetic Linkage Map
354
342
ftp
Mus musculus
MGI
Mouse Genome Database genetic Map
21,836
18,094
ftp
WI/MRC-RH
Whitehead-MRC RH Mouse Map v12
14,158
13,813
ftp
WI_GEN
Whitehead Mouse Genetic Map
6,536
6,518
ftp
WI_YAC
Whitehead Mouse YAC Map
7,578
7,569
ftp
Musa acuminata
AFCAM_06
AFCAM 2006
243
20
ftp
Borli_2009
Borli 2009
483
113
ftp
Nicotiana tabacum
Bindler_2007
Red Russian x Hicks Broad Leaf
292
278
ftp
Nicotiana tomentosiformis
Wu_2010
Nicotiana tomentosiformis diploid tobacco linkage map
297
289
ftp
Oryza sativa
JP_HD_00
Latest High-density Rice Genetic Map
3,278
53
ftp
JP_HD_98
High-density Rice Genetic Map
2,286
53
ftp
R
R
894
121
ftp
RC00
RC00
462
17
ftp
RC01
Cornell RFLP 2001
927
44
ftp
RC94
Cornell RFLP 1994
615
10
ftp
RD00
RD00
401
258
ftp
RD01
Cornell SSR 2001
601
431
ftp
RK98
KRGRP 1998
295
74
ftp
RS98
RS98
325
66
ftp
RW99
RW99
567
2
ftp
Ovis aries
CAB
CAB Ovine Linkage Map
883
877
ftp
SM4.7
SheepMap4.7
1,411
1,210
ftp
Phaseolus vulgaris
Adam-Blondon94
Paris RFLP 1994
153
2
ftp
Blair_03
Blair 2003 SSR
246
70
ftp
Gepts98
Freyre 98
234
1
ftp
Pinus pinaster
ritter_02
ritter_02
747
2
ftp
Plasmodium falciparum
NIAID
NIAID Genetic Map
846
844
ftp
Populus trichocarpa
Cervera_01
Cervera_01
336
55
ftp
Tuskan_04
Tuskan_04
540
78
ftp
Prunus armeniaca
Lito_2007
LxB 2007
578
153
ftp
Valenciano_2002
GxV F1 2002
420
13
ftp
Lito_2003
LxL F2 2003
211
11
ftp
Lito_2007
LxB 2007
578
153
ftp
Polonais_2004
Polonais 2004
109
26
ftp
StarkEarlyOrange_2004
Stark Early Orange 2004
140
29
ftp
Valenciano_2002
GxV F1 2002
420
13
ftp
Prunus dulcis
Ferragnes_2000
Ferragnes 2000
126
4
ftp
Tuono_2000
Tuono 2000
98
5
ftp
Prunus dulcis x Prunus persica
Dirlewanger_2004
Garfi x Nemared 2003
196
124
ftp
T_x_E_2003
Texas x Earlygold 2003
347
63
ftp
Prunus persica
P_x_F_2001
PxF peach x P.prunus BC1 2001
108
15
ftp
P_x_F_2005
PxF peach x P.ferganensis BC1 2005
216
48
ftp
Prunus persica x Prunus dulcis
PMP1_2002
peach x almond 2002
161
4
ftp
Pyrus communis
Hayashi_Bartlett_2004
Bartlett Hayashi 2004
256
68
ftp
Yamamoto_Bartlet_2002
Bartlett, 2002
226
43
ftp
Pyrus pyrifolia
Yamamoto_Housui_2002
Housui Hayashi 2004
660
53
ftp
Yamamoto_Housui_2002
Housui Hayashi 2004
660
53
ftp
Quercus robur
Barreneche_98f
Barreneche female 1998
94
13
ftp
Barreneche_98m
Barreneche male 1998
96
14
ftp
Rattus norvegicus
FHH X ACI
Rat FHH x ACI F2 intercross genetic Map
686
684
ftp
MCW RH
Rat radiation hybrid Map
24,328
24,142
ftp
SHRSP X BN
Rat SHRSP x BN F2 intercross genetic Map
2,025
2,016
ftp
Rosa chinensis
Dugo_2005
Rosa chinensis 2005 genetic
146
1
ftp
Rosa hybrid cultivar
Hibrand_2008
Rosa hybrid 2008 genetic
225
2
ftp
Rosa multiflora
93_1-117_2005
93/1-117 2005 genetic
271
15
ftp
93_1-119_2005
93/1-119 2005 genetic
271
15
ftp
Rubus idaeus
L_x_Gm_2006
Red Raspberry L x Gm 2006
348
48
ftp
MJ_x_MO_2007
Red Raspberry MJ x MO 2007
120
18
ftp
Salix viminalis
K3_consensus
K3 consensus
332
10
ftp
Secale cereale
P87_x_P105_01
Rye, P87 x P105, update
856
12
ftp
P87_x_P105_04
Rye, P87 x P105, 2004
552
13
ftp
U_x_E_01
Rye, UC90 x E-line
762
1
ftp
P87_x_P105_01
Rye, P87 x P105, update
856
12
ftp
P87_x_P105_04
Rye, P87 x P105, 2004
552
13
ftp
U_x_E_01
Rye, UC90 x E-line
762
1
ftp
Solanum lycopersicum
LEXPIMP_01
Tomato-EXPIMP 2001
145
7
ftp
LEXPIMP_05
Tomato-EXPIMP 2005
83
76
ftp
Ohyama_2009
2009 Kazusa SSR
191
153
ftp
Shirasawa_SSR
2010 Kazusa SSR
2,116
1,460
ftp
Solanum melongena
Nunome_2009
Eggplant Nunome 2009
236
220
ftp
Solanum tuberosum
SCRI_98
SCRI 1998
112
22
ftp
Sorghum bicolor
Hart00
Bhattramakki et al 2000
469
144
ftp
Hart99
Kong et al 2000
145
33
ftp
Klein00
Klein 2000
702
43
ftp
Klein04
Klein 2004
708
44
ftp
Sus scrofa
MARC
MARC Porcine Linkage Map
1,283
1,232
ftp
Theobroma cacao
2004_RGA_UPA402_x_UF676
2004 cocoa resistance gene linkage map
460
21
ftp
CIRAD_00
CIRAD_00
422
21
ftp
Flament_2001
Phytophthora palmivora resistance map
204
8
ftp
Schnell_2003
2003 cocoa resistance gene linkage map
49
19
ftp
Tribolium castaneum
TCLM
Tribolium castaneum Linkage Map
14
14
ftp
TCLM
Tribolium casteneum Linkage Map
428
428
ftp
Trifolium pratense
Con_2009
2009 red clover consensus
1,804
1,228
ftp
SSR_2005
2005 red clover SSR
1,507
1,233
ftp
Triticum aestivum
AxF_03
Arina x Forno
1,362
150
ftp
AxF_03
Arina x Forno
1,362
150
ftp
CS_SQ1
Wheat, Chinese Spring x SQ1
646
236
ftp
Comp04
2004 Composite
4,034
755
ftp
Court_x_CSPSI_03
Wheat, Courtot x Chinese Spring, 2005
511
152
ftp
FxO_99
Forno x Oberkulmer 1999
948
7
ftp
FxO_99
Forno x Oberkulmer 1999
948
7
ftp
Grandin_x_BR34
Wheat, Grandin x BR34, 2005
368
111
ftp
Hayden_06
Wheat, Composite, 2007
987
489
ftp
N_x_W_2008
Wheat, Nanda2419 x Wangshuibai
887
432
ftp
RFLP_95
Synthetic-Opata Map
1,960
4
ftp
SSR_00
Synthetic-Opata BARC SSR
1,411
374
ftp
SSR_02
Synthetic-Opata 2002 SSR
310
61
ftp
SSR_03
Wheat, Synthetic x Opata, BARC
1,408
410
ftp
SSR_04
Consensus SSR
1,234
567
ftp
SSR_98
Synthetic-Opata 1998 SSR
582
217
ftp
Syn_x_Opata_03
Wheat, Synthetic x Opata, 2003
367
59
ftp
Triticum turgidum
JKxC_00
T.turgidum, JK x Cham1
1,194
23
ftp
JK_x_C_2
T.turgidum, JK x Cham1,2
470
24
ftp
JKxC_00
T.turgidum, JK x Cham1
1,194
23
ftp
Kofa_x_UC1113
T.turgidum, Kofa x UC1113
306
215
ftp
Langdon_x_G18-16
Langdon x G18-16
307
60
ftp
M_x_M_ssr
T.turgidum, Messapia x dicoccoides SSR
291
74
ftp
O_x_M
Omrabi5 x dicoccoides, QTL
299
93
ftp
S_x_C
T.turgidum, Svevo x Ciccio
249
96
ftp
Turnera subulata x Turnera krapovickasii
Labonne_09
Turnera interspecific linkage map
86
4
ftp
Vigna angularis
Tsukuba_2005
azuki bean 2005
485
6
ftp
Vigna umbellata
Somta_2006
V. umbellata x V. nakashimae
175
4
ftp
Vitis vinifera
A1_C_SG
A1_C_SG
256
230
ftp
A2_Riesling
A2_Riesling
108
105
ftp
DG_C_Ch_x_Bi
DG_C_ChXBi
1,256
284
ftp
DG_C_Ch_x_Bi
DG_C_ChXBi
1,256
284
ftp
DG_F_Chardonnay
DG_F_Chardonnay
245
233
ftp
DG_M_Bianca
DG_M_Bianca
263
250
ftp
D_C_Apy
D_C_Apy
214
190
ftp
D_F_2223
D_F_2223
157
147
ftp
D_M_2121
D_M_2121
184
171
ftp
Grenache_031220
Grenache_031220
179
174
ftp
Integrated_07
Integrated_07
515
400
ftp
Integrated_fw_07
Integrated_fw_07
257
250
ftp
RGC_2007
resistance gene candidates 2007
743
398
ftp
R_C_Ri_x_CS
R_C_RiXCS
688
165
ftp
R_C_Ri_x_CS
R_C_RiXCS
688
165
ftp
R_F_Riesling
R_F_Riesling
138
134
ftp
R_M_CabernetS
R_M_CabernetS
144
141
ftp
Riesling_031220
Riesling_031220
100
98
ftp
SG_031220
SG_031220
220
212
ftp
Syrah_031220
Syrah_031220
174
170
ftp
Zea mays
Bins
bins
7,627
1,070
ftp
MW99
CU 99
2,174
3
ftp
Gene_05
Genetic 2005
2,463
33
ftp
IBM00
IBM 2000
365
290
ftp
IBM02
IBM1
1,648
767
ftp
IBM04
IBM2
2,003
1,107
ftp
IDP_4_ISU
ISU IBM 4
3,202
2,220
ftp
IDP_4_MMP
MMP IDP
3,413
2,401
ftp
IDP_7
ISU IBM 7
5,705
3,661
ftp
MITE_2000
MITE
495
2
ftp
MW99
CU 99
2,174
3
ftp
UMC98
UMC 98
1,739
19
ftp
1 Among markers mapped in the map, a subset of markers that are STSs and with available primer sequences were imported to UniSTS.
2 PubMed, MapViewer, data source. Clicking on the will display the first chromosome using the Map Viewer.
Last Updated June 12, 2013