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JCM BLAST Search

JCM BLAST Search

You can search for JCM strains (or equivalent strains) with genome sequences homologous to your query sequences.

The following BLAST programs are available.

Program	Query	Database
blastn	Nucleotide	Nucleotide
blastp	Protein	Protein
blastx	Protein	Protein
tblastn	Protein	Nucleotide
tblastx	Nucleotide	Nucleotide

How to use

1. Input query sequences (FASTA format)

Input your query sequences in the box. Or, upload a text file with your query sequences.
Note: Up to 5 queries. Mixed bases other than N (e.g., R and Y) are not supported; if mixed bases other than N are included in the query sequence, replace them all with N before starting the search.

Examples:

>Query nucleotide sequence
atgcgaagtgaacagatttctggctcgtcactcaatccgtcttgtcgtttcagttctgcgtactctcctgtgaccaggcagcgaaaagacatgagtcgatga

>Query protein sequence
MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE

2. Select a reference database

Database	Target region	Source*
Genome sequence (GenBank; nucleotide)	Whole genome sequence	GenBank
Coding sequence (GenBank; nucleotide)	Protein-coding regions	GenBank
Coding sequence (RefSeq; nucleotide)	Protein-coding regions	RefSeq
Coding sequence (GenBank; protein)	Protein-coding regions	GenBank
Coding sequence (RefSeq; protein)	Protein-coding regions	RefSeq
*Prokaryotic genomes only. What is RefSeq/GenBank?

Last database update: Aug 20th, 2024

3. (Optional) Adjust advanced parameters

4. Click “send query” button

Please not close the window or press the back button until the results are displayed.
On the result page, click the JCM number, and jump to its online catalogue page.

Note: The results are dependent on the reference databases, and thus the presence/absence of the query sequences in the genomes of the JCM strains is not guaranteed.

If any problems, please let us know using this form.

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