Mycobacterium tuberculosis Pathway/Genome Databases | ![]() |
This website contains 50 Mycobacterium tuberculosis genomes (show list) and associated metabolic pathways. This site is part of the larger BioCyc collection of thousands of Pathway/Genome Databases for sequenced genomes. Click the "Change Current Database" button (above) to explore the available databases.
This site includes extensive retrieval, visualization and analysis tools, including a genome browser and a metabolic map diagram. There are tools for analysis of gene expression, metabolomics and ChIP-chip data. You can search and align sequences for Vibrio cholerae and other microbial genomes and perform comparative analysis. You can store groups of genes and pathways into a SmartTable, and then browse, analyze and share with other users.
What people are saying
"BsubCyc is a tool of the utmost value."
![Penn State](https://mycobacterium.biocyc.org/graphics2021/pennState.png)
Paul Babitzke
Prof. of Biochemistry
& Molecular Biology
"My lab uses these resources on a daily basis."
![University of Wisconsin](https://mycobacterium.biocyc.org/graphics2021/UWisconsin.png)
Patricia Kiley,
Professor and Chair,
Dep't. of Biomolecular Chemistry
"We rely on BioCyc's Gene Pages and Overview Diagrams almost daily."
![University of Minnesota](https://mycobacterium.biocyc.org/graphics2021/UMinnesota.png)
Arkady Khodursky
Assoc. Prof. Biochemistry
"We use BioCyc and MetaCyc extensively to investigate the metabolic and regulatory processes of organisms we study."
![Pacific Northwest National Lab](https://mycobacterium.biocyc.org/graphics2021/pnnlFlatLogo.jpg)
William Cannon, Team Lead
Computational Biology
"BioCyc is the go-to resource of knowledge and tools for Ginkgo scientists."
![Ginkgo Bioworks](https://mycobacterium.biocyc.org/graphics2021/GinkgoBioworks.png)
"BioCyc is a tremendous resource for pathway analysis in metabolomics."
![University of Georgia](https://mycobacterium.biocyc.org/graphics2021/UGA.png)
Art Edison, Dept of Genetics
"We make extensive use of the BioCyc full metabolic network diagram for omics data analysis."
![Great Lakes Bioenergy](https://mycobacterium.biocyc.org/graphics2021/GreatLakes.png)
Timothy J. Donohue, Director
"I have not found another database that has a better interface than BioCyc."
![University of Michigan](https://mycobacterium.biocyc.org/graphics2021/UMich.png)
Gary B. Huffnagle, Professor
Microbiology and Immunology
Learning Library
Tutorial Series
Tutorial #1: Introduction to BioCyc
Tutorial #2: Introduction to SmartTables
Tutorial #3: Zoomable Metabolic Map, Comparative Tools, Regulatory Network
Tutorial #4: Omics Data Analysis
Tutorial #5: Pathway Collages
Tutorial #6: Creating a Pathway/Genome Database
- Part 1A: Introduction to Database Building and Pathologic (14:04)
- Part 1B: Building a Database: Detailed Pathologic Example (23:53)
- Part 2A: General Editing Strategies (8:00)
- Part 2B: Creating and Editing Reactions and Compounds (17:32)
- Part 2C: Updating Proteins, Citations, GO Terms, and Enzymatic Reactions (26:10)
- Part 2D: Making and Editing Pathways (9:42)