SemGen

Description: SemGen is a software tool for automating the modular composition and decomposition of biosimulation models. It uses BioPortal web services to provide model annotators access to reference ontology terms.

Institution: University of Washington

Contacts: Maxwell Neal, Daniel Cook, John Gennari

Home Page: http://sbp.bhi.washington.edu/projects/semgen

Ontologies Used

• Chemical Entities of Biological Interest Ontology
• Electrocardiography Ontology
• Foundational Model of Anatomy
• Gene Ontology
• Mouse Adult Gross Anatomy Ontology
• National Cancer Institute Thesaurus
• Ontology of Physics for Biology
• Phenotypic Quality Ontology
• SNOMED CT