(Translated by https://www.hiragana.jp/)
COMBINE lab · GitHub
Skip to content
@COMBINE-lab

COMBINE lab

COMputational BIology and Network Evolution lab

Popular repositories Loading

  1. salmon salmon Public

    🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

    C++ 761 160

  2. alevin-fry alevin-fry Public

    🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

    Rust 160 15

  3. pufferfish pufferfish Public

    An efficient index for the colored, compacted, de Bruijn graph

    C 107 19

  4. RapMap RapMap Public

    Rapid sensitive and accurate read mapping via quasi-mapping

    C++ 89 23

  5. cuttlefish cuttlefish Public

    Building the compacted de Bruijn graph efficiently from references or reads.

    C++ 78 7

  6. oarfish oarfish Public

    long read RNA-seq quantification

    Rust 58 1

Repositories

Showing 10 of 116 repositories
  • seqproc Public
    COMBINE-lab/seqproc’s past year of commit activity
    Rust 4 BSD-3-Clause 1 4 0 Updated Aug 23, 2024
  • COMBINE-lab/combine-lab.github.io’s past year of commit activity
    HTML 8 5 0 1 Updated Aug 22, 2024
  • oarfish Public

    long read RNA-seq quantification

    COMBINE-lab/oarfish’s past year of commit activity
    Rust 58 BSD-3-Clause 1 2 4 Updated Aug 21, 2024
  • lr_quant_benchmarks Public

    A replicable and modular benchmark for long-read RNA transcript quantification methods

    COMBINE-lab/lr_quant_benchmarks’s past year of commit activity
    Python 4 BSD-3-Clause 1 1 1 Updated Aug 16, 2024
  • piscem-cpp Public

    A small sparse and fast reference index based on SShash and Tiling encoding

    COMBINE-lab/piscem-cpp’s past year of commit activity
    C 6 MIT 1 1 0 Updated Aug 15, 2024
  • cuttlefish Public

    Building the compacted de Bruijn graph efficiently from references or reads.

    COMBINE-lab/cuttlefish’s past year of commit activity
    C++ 78 BSD-3-Clause 7 10 2 Updated Aug 10, 2024
  • radtk Public

    Various tools for working with RAD files

    COMBINE-lab/radtk’s past year of commit activity
    Rust 1 BSD-3-Clause 0 1 0 Updated Aug 5, 2024
  • COMBINE-lab/libradicl’s past year of commit activity
    Rust 1 BSD-3-Clause 2 0 0 Updated Aug 3, 2024
  • piscem Public

    Rust wrapper for the next generation (still currently in C++)

    COMBINE-lab/piscem’s past year of commit activity
    Rust 20 BSD-3-Clause 1 3 0 Updated Aug 1, 2024
  • simpleaf Public

    A rust framework to make using alevin-fry even simpler

    COMBINE-lab/simpleaf’s past year of commit activity
    Rust 44 BSD-3-Clause 3 8 0 Updated Aug 1, 2024

Most used topics

Loading…