github: iamh2o aka john major linkedin: john major pubmed blog
- Code To Stitch Multiple Images Of A Tube Into A Single Image -for accessioning-
- FedEx Track API Python Wrapper
- Zebra Printer Fleet Manager & Print Job API
- coming soon
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
RNA-seq workflow using STAR and DESeq2
slurm executor for use by snakemake when running on the slurm flavor which is unique to aws parallel cluster slrum pcluster.
This is the development home of the workflow management system Snakemake. For general information, see
A Snakemake executor plugin for submitting jobs to a SLURM cluster
transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation
Slim fastapi / jinja2 web application to expose metapub command line functionality.
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
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