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1. VNom VNom Public

   Viroid Nominator (VNom): reference free tool for nominating viroid-like de novo assembled contigs

   Python 13 3

2. KrakenGrafter KrakenGrafter Public

   a simple python script for "grafting" on novel sequences to a custom Kraken2 database

   Python 3

3. FireTools FireTools Public

   a parent repo for tools written by I.N.Z during their tenure at the Fire Lab

   1

4. Bracken2OTU Bracken2OTU Public

   simple python script that takes Bracken outputs and merges them into one OTU table, user can specify if a subset of outputs need to be summed together prior to appending to the OTU table

   Python

5. MSAcleaner MSAcleaner Public

   a simple python script that takes in a FASTA formatted MSA and, given a set of 'reference' sequences, deletes any sequences that contribute to insertions given a fractional abundance

   Python

6. SeqDoubler SeqDoubler Public

   a trivial python script that doubles input FASTA formatted sequences end on - helps deal with bisection due to circular permutation

   Python