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A long-read (PacBio and ONT) analysis pipeline written in Nextflow
Lightweight (<3KB) vue library offering context-sensitive suggestions in your textareas
Allows you to maintain all the necessary cruft for packaging and building projects separate from the code you intentionally write. Built on-top of, and fully compatible with, CookieCutter.
MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data
A Rust software to extract Unique Molecular Identifiers in FastQ files and embedd them into the ID of the corresponding reads.
A small repository with instructions on how to build Singularity images inside a Docker container.
Quickly browse the history of a file from any git repository
The command line interface for access to the Data Delivery System primarily developed by the SciLifeLab Data Centre.
A cloud-based system for the delivery of data from SciLifeLab Facilities to their users (e.g. research group).
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Command-line program to export Polar RCX5 training sessions or upload them to Strava
Variational autoencoder for metagenomic binning
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Web tool to find and annotate NGI publications
Enhanced cookiecutter template for Python libraries.
A curated collection of Nextflow implementation patterns
Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
Constant DataBase tools for indexing and retrieving records from multi-FASTA or similarly structured files
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data