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In summary.txt what's the difference between length and bases? · Issue #188 · brentp/mosdepth · GitHub
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In summary.txt what's the difference between length and bases? #188

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nuno5645 opened this issue Nov 21, 2022 · 0 comments
Open

In summary.txt what's the difference between length and bases? #188

nuno5645 opened this issue Nov 21, 2022 · 0 comments

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@nuno5645
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chrom length bases mean min max
chr13 115169878 8508921 0.07 0 8833
chr13_region 13390 10009503 747.54 0 8833
chr17 81195210 5713210 0.07 0 8689
chr17_region 8316 6078518 730.94 0 8689
total 196365088 14222131 0.07 0 8833
total_region 21706 16088021 741.18 0 8833

so basically i want to get the number of bases and mapped bases so i can add to my quality metrics report.
The problem is that i am at a loss at which variables i should look at

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