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fix version number · sirusb/segmenter@9a766e9 · GitHub
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fix version number
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Mahmoud Ahmed committed Apr 19, 2021
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41 changes: 41 additions & 0 deletions DESCRIPTION
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Package: segmenter
Type: Package
Title: Perform Chromatin Segmentation Analysis in R by Calling ChromHMM
Version: 0.99.0
Description: Chromatin segmentation analysis transforms ChIP-seq data into
signals over the genome. The latter represents the observed states in a
multivariate Markov model to predict the chromatin's underlying states.
ChromHMM, written in Java, integrates histone modification datasets to learn
the chromatin states de-novo. The goal of this package is to call chromHMM
from within R, capture the output files in an S4 object and interface to
other relevant Bioconductor analysis tools. In addition, segmenter provides
functions to test, select and visualize the output of the segmentation.
Authors@R: person("Mahmoud", "Ahmed",
email = "mahmoud.s.fahmy@students.kasralainy.edu.eg",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-4377-6541"))
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Depends: R (>= 4.0)
Suggests:
testthat,
knitr,
rmarkdown,
TxDb.Hsapiens.UCSC.hg18.knownGene,
Gviz
Imports:
ChIPseeker,
GenomicRanges,
SummarizedExperiment,
IRanges,
S4Vectors,
bamsignals,
ComplexHeatmap,
graphics,
stats,
utils
VignetteBuilder: knitr
biocViews: Software,
HistoneModification

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