Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
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Updated
Aug 23, 2024 - Rust
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain
A lightweight tool to find clusters of samples within a phylogeny.
This script allows to get Enterobacter cloacae complex hsp60 cluster from a multi-Fasta file
Code for calculating correlations between clade indicators.
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