Structural variant and indel caller for mapped sequencing data
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Updated
Dec 21, 2022 - C++
Structural variant and indel caller for mapped sequencing data
Strelka2 germline and somatic small variant caller
Structural variation and indel detection by local assembly
Microassembly based somatic variant caller for NGS data
Generic human DNA variant annotation pipeline
A method for variant graph genotyping based on exact alignment of k-mers
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
ClairS - a deep-learning method for long-read somatic small variant calling
Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
A Platypus-based variant calling pipeline for cancer data
A Platypus-based workflow for indel calling
Barton and Zeng (2018) - Pipeline and scripts for popgen analysis of whole-genome drosophila data.
A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
🐳 Dockerized WES pipeline for variants identification in mathced tumor-normal samples
Barton and Zeng (2019) - Pipeline for great tit indel analysis.
A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data
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