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523 public repositories
matching this topic...
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
Updated
Jun 7, 2024
Python
Image-processing software for cryo-electron microscopy
Tools for computational pathology
Updated
Jul 8, 2024
Python
cuCIM - RAPIDS GPU-accelerated image processing library
Updated
Jul 19, 2024
Jupyter Notebook
Scientific analysis of nanoscale materials imaging data
Updated
Jun 7, 2024
Jupyter Notebook
GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
Updated
Jul 19, 2024
Jupyter Notebook
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
Updated
Jul 19, 2024
Python
Deep and Machine Learning for Microscopy
Updated
Jun 26, 2024
Python
CellViT: Vision Transformers for Precise Cell Segmentation and Classification
Updated
Jun 17, 2024
Python
Automated 3D cell detection in very large images
Updated
Jul 19, 2024
Python
PyTorch Connectomics: segmentation toolbox for EM connectomics
Updated
Jul 9, 2024
Python
Read and write Neuroglancer datasets programmatically.
Updated
Jul 20, 2024
Python
Visualize, share and annotate your large 3D images online
Updated
Jul 19, 2024
TypeScript
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
Updated
Jul 16, 2024
Jupyter Notebook
A lightweight python module to interact with atlases for systems neuroscience
Updated
Jul 21, 2024
Python
Automated 3D brain registration with support for multiple species and atlases.
Updated
Jul 11, 2024
Python
Axon/Myelin segmentation using Deep Learning
Updated
Jul 17, 2024
Python
A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
A collection of tools for painting super-resolution images
Updated
Jul 18, 2024
Python
TF Implementation of Multiple Instance Learning FCN.
Updated
Aug 24, 2020
Python
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