View Designer/X - https://sourceforge.net/projects/vdx/
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Updated
May 10, 2024 - C
View Designer/X - https://sourceforge.net/projects/vdx/
This script takes a FASTA file and a list of motifs (.txt) and generates a .SVG image showing the motifs locations on each sequence.
Calculate the distribution of motifs in RSG Graph
This implementation is an alternative that provides full control over how the graphics of a Sequence Logo should look like, and is an alternative to an application called WebLogo. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.
barry: Your go-to motif accountant
Simple Python parser for MotEvo.
Generate image of genes given fasta file and motif file. The image identifies exons, introns, and locations of motifs within the gene.
This is a high discrimination scanner designed to recognise DNA motifs within a long stretch of DNA. Most importantly, this implementation shows how to implement a variable sensitivity for detection, by modifying the pseudocount values.
English Project
Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.
basic c routines, ieee754, bash scripts,
Sequence Logos using logarithms is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.
Sequence Logo - relative style is an alternative that provides full control over how the graphics of a Sequence Logo should look like, and is an alternative to an application called WebLogo. All the inner workings of this open source application are written in native javascript.
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