(Translated by https://www.hiragana.jp/)
Marine Microbes from RV Investigator voyage IN2016_V04, Australia (2016) - Ocean Biodiversity Information System

Marine Microbes from RV Investigator voyage IN2016_V04, Australia (2016)

URLhttps://www.marine.csiro.au/ipt/resource?r=bioplatforms_mm_in2016_v04
Repository URL https://www.marine.csiro.au/ipt/
Node OBIS Australia
Published2022-06-28 07:23
First registered2020-06-20 12:12
Abstract

This dataset was acquired on the RV Investigator voyage IN2016_V04. The aim was to characterise the diversity and function of microbial communities in the relatively warm Eastern Australian Current (EAC), against the relatively cool water of the Tasman Sea and adjacent shelf waters. Full details of data, reports and publications of the voyage is at http://www.marine.csiro.au/data/trawler/survey_details.cfm?survey=IN2016_V04

Note on data download/processing:

Data downloaded from Australian Microbiome Initiative via Bioplatforms Australia Data Portal on 17 June 2022. The search filter applied to download data from Bioplatforms Australia Data portal are stored in the Darwin Core property (identificationRemarks). Taxonomy is assigned according to the taxonomic database (SILVA 138) and method (Sklearn) which is stored in the Darwin Core Extension

DNA derived data property (otu_db). Prefix were removed from the taxonomic names as shown in the example (e.g. d__Bacteria to Bacteria). Scientific name is assigned to the valid name available from the highest taxonomic rank.

This collection is published as Darwin Core Occurrence, so the event level measurements need to be replicated for every occurrence. Instead of data replication, the event level eMoF data are made available separately at https://www.marine.csiro.au/data/services/obisau/emof_export.cfm?ipt_resource=bioplatforms_mm_in2016_v04

CitationPlease see https://www.australianmicrobiome.com/protocols/acknowledgements/ for citation examples and links to the data policy.
RightsThis work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License
Keywords Samplingevent, Specimen, Samplingevent
Contacts
Creator Martina Doblin
University of Technology Sydney
Contact Martina Doblin
University of Technology Sydney
Metadata Provider Martina Doblin
University of Technology Sydney
Publisher OBIS Australia Node manager
CSIRO National Collections and Marine Infrastructure
Point Of Contact Andrew Bissett

Statistics

Occurrence records 2,139,137
Species level 14,849
Absence records 0
Event records 0
MoF records 0
Sequence records 2,539,104
Species 248
Taxa 767
Time range 2016 - 2016

This dataset has appeared in 1,846 downloads in 2024, with a total of 2,789,347,530 records.

Data quality

Dropped records

Dropped records 399,967
Not marine 60
No WoRMS match 399,907
No coordinates 0
Zero coordinates 0

Taxonomic issues

Marine unsure 27,727
No accepted name available 1,597

Missing and invalid fields

Field Missing Invalid
scientificNameID 413,659 0

Spatial issues

Records on land 0
More than 20 km from shore 0
Depth exceeds bathymetric depth 0

Top taxa

IUCN Red List All taxa
Scientific name Records
Alphaproteobacteria
Phylum Proteobacteria > Class Alphaproteobacteria
449,660
Nitrosopumilaceae
Phylum Thaumarchaeota > Class Thaumarchaeota incertae sedis
366,489
Bacteria
262,322
Syndiniales
Phylum Myzozoa > Class Dinophyceae
180,936
Thermoplasmata
Phylum Euryarchaeota > Class Thermoplasmata
160,377
Pseudomonadales
Phylum Proteobacteria > Class Gammaproteobacteria
61,034
Cyanobacteria Stanier ex Cavalier-Smith, 2002
Phylum Cyanobacteria
52,171
Gammaproteobacteria
Phylum Proteobacteria > Class Gammaproteobacteria
47,060
Rhodospirillales
Phylum Proteobacteria > Class Alphaproteobacteria
38,138
Dinophyceae Fritsch, 1927
Phylum Myzozoa > Class Dinophyceae
37,397

Distribution

Records

Composition

detailed (class) simple

DNA barcodes

Barcode region Occurrence records
16S rRNA 1,718,167
18S rRNA 420,970

Occurrences