URL | https://www.marine.csiro.au/ipt/resource?r=bioplatforms_mm_in2016_v04 | ||||||||||
Repository URL | https://www.marine.csiro.au/ipt/ | ||||||||||
Node | OBIS Australia | ||||||||||
Published | 2022-06-28 07:23 | ||||||||||
First registered | 2020-06-20 12:12 | ||||||||||
Abstract | This dataset was acquired on the RV Investigator voyage IN2016_V04. The aim was to characterise the diversity and function of microbial communities in the relatively warm Eastern Australian Current (EAC), against the relatively cool water of the Tasman Sea and adjacent shelf waters. Full details of data, reports and publications of the voyage is at http://www.marine.csiro.au/data/trawler/survey_details.cfm?survey=IN2016_V04 Note on data download/processing: Data downloaded from Australian Microbiome Initiative via Bioplatforms Australia Data Portal on 17 June 2022. The search filter applied to download data from Bioplatforms Australia Data portal are stored in the Darwin Core property (identificationRemarks). Taxonomy is assigned according to the taxonomic database (SILVA 138) and method (Sklearn) which is stored in the Darwin Core Extension DNA derived data property (otu_db). Prefix were removed from the taxonomic names as shown in the example (e.g. d__Bacteria to Bacteria). Scientific name is assigned to the valid name available from the highest taxonomic rank. This collection is published as Darwin Core Occurrence, so the event level measurements need to be replicated for every occurrence. Instead of data replication, the event level eMoF data are made available separately at https://www.marine.csiro.au/data/services/obisau/emof_export.cfm?ipt_resource=bioplatforms_mm_in2016_v04 | ||||||||||
Citation | Please see https://www.australianmicrobiome.com/protocols/acknowledgements/ for citation examples and links to the data policy. | ||||||||||
Rights | This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License | ||||||||||
Keywords | Samplingevent, Specimen, Samplingevent | ||||||||||
Contacts |
|
Occurrence records | 2,139,137 | |
Species level | 14,849 |
|
Absence records | 0 | |
Event records | 0 | |
MoF records | 0 | |
Sequence records | 2,539,104 | |
Species | 248 | |
Taxa | 767 | |
Time range | 2016 - 2016 |
This dataset has appeared in 1,846 downloads in 2024, with a total of 2,789,347,530 records.
Dropped records | 399,967 |
|
Not marine | 60 |
|
No WoRMS match | 399,907 |
|
No coordinates | 0 |
|
Zero coordinates | 0 |
|
Marine unsure | 27,727 |
|
No accepted name available | 1,597 |
|
Field | Missing | Invalid | |
---|---|---|---|
scientificNameID | 413,659 | 0 |
|
Records on land | 0 |
|
More than 20 km from shore | 0 |
|
Depth exceeds bathymetric depth | 0 |
|
Scientific name | Records |
---|---|
Alphaproteobacteria
Phylum Proteobacteria > Class Alphaproteobacteria |
449,660 |
Nitrosopumilaceae
Phylum Thaumarchaeota > Class Thaumarchaeota incertae sedis |
366,489 |
Bacteria
|
262,322 |
Syndiniales
Phylum Myzozoa > Class Dinophyceae |
180,936 |
Thermoplasmata
Phylum Euryarchaeota > Class Thermoplasmata |
160,377 |
Pseudomonadales
Phylum Proteobacteria > Class Gammaproteobacteria |
61,034 |
Cyanobacteria Stanier ex Cavalier-Smith, 2002
Phylum Cyanobacteria |
52,171 |
Gammaproteobacteria
Phylum Proteobacteria > Class Gammaproteobacteria |
47,060 |
Rhodospirillales
Phylum Proteobacteria > Class Alphaproteobacteria |
38,138 |
Dinophyceae Fritsch, 1927
Phylum Myzozoa > Class Dinophyceae |
37,397 |
Barcode region | Occurrence records |
---|---|
16S rRNA | 1,718,167 |
18S rRNA | 420,970 |
Name | OceanExpert ID |
---|---|
University of Technology, Sydney | 15442 |
CSIRO National Collections and Marine Infrastructure | 20942 |