Name: Marine metagenomes from the bioGEOTRACES project (2010-2011)
License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC) 4.0 License

Marine metagenomes from the bioGEOTRACES project (2010-2011)

URL

https://www.marine.csiro.au/ipt/resource?r=biogeotraces

Repository URL

https://www.marine.csiro.au/ipt/

Node

OBIS Australia

Published

2023-10-27 02:21

First registered

2023-10-27 02:22

Abstract

Marine metagenomes from the bioGEOTRACES project Metagenome. Study details at https://www.ebi.ac.uk/metagenomics/studies/MGYS00005294 This dataset was sourced from GBIF https://www.gbif.org/dataset/3de01c29-b3d4-4eeb-bd5c-b2bb475566cc on 2023-10-10. It contains samples from CSIRO Voyage SS2011_V02 (details at http://127.0.0.1/data/trawler/survey_details.cfm?survey=SS2011_V02) and known within the GEOTRACES survey GP13.

Of the 6000+ taxa, about 3,300 can be matched to WoRMS.

Citation

MGnify (2020). Marine metagenomes from the bioGEOTRACES project. Sampling event dataset https://doi.org/10.15468/oifcho accessed via GBIF.org on 2023-09-28

Rights

This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC) 4.0 License

Keywords

Samplingevent

Contacts

Creator	Robert Finn European Molecular Biology Laboratory
Contact	Robert Finn European Molecular Biology Laboratory
Metadata Provider	Robert Finn European Molecular Biology Laboratory
Publisher	OBIS Australia Node manager CSIRO National Collections and Marine Infrastructure Data Centre

Statistics

Occurrence records	195,366
Species level	14,792
Absence records	0
Event records	480
MoF records	0
Sequence records	0
Species	625
Taxa	3,035
Time range	2010 - 2011

This dataset has appeared in 1,750 downloads in 2024, with a total of 260,000,097 records.

Data quality

Dropped records

Dropped records	66,549
Not marine	881
No WoRMS match	65,668
No coordinates	0
Zero coordinates	0

Taxonomic issues

Marine unsure	21,805
No accepted name available	2,350

Missing and invalid fields

Field	Missing	Invalid
scientificNameID	72,737	0

Spatial issues

Records on land	0
More than 20 km from shore	0
Depth exceeds bathymetric depth	477

Top taxa

IUCN Red List All taxa IUCN Red List All taxa IUCN Red List All taxa

Scientific name	Records
Chrysochromulina Lackey, 1939 Phylum Haptophyta > Class Coccolithophyceae	1,471
Gammaproteobacteria Phylum Proteobacteria > Class Gammaproteobacteria	1,151
Verrucomicrobia Hedlund, Gosink & Staley, 1997 Phylum Verrucomicrobia	1,108
Actinobacteria Phylum Actinobacteria	1,001
Gymnodinium F.Stein, 1878 Phylum Myzozoa > Class Dinophyceae	818
Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, 1967 Phylum Haptophyta > Class Prymnesiophyceae	755
Proteobacteria Phylum Proteobacteria	755
Rhodospirillaceae Phylum Proteobacteria > Class Alphaproteobacteria	722
Synechococcus Nägeli, 1849 Phylum Cyanobacteria > Class Cyanophyceae	690
Aureispira Hosoya, Arunpairojana, Suwannachart, Kanjana-Opas & Yokota, 2006 Phylum Bacteroidetes > Class Sphingobacteria	686

Distribution

Records

Composition

detailed (class) simple

Data providers

Name	OceanExpert ID
CSIRO National Collections and Marine Infrastructure	20942
European Molecular Biology Laboratory