URL | https://www.marine.csiro.au/ipt/resource?r=bioplatforms_mm_in2016_v03 | ||||||||||||||
Repository URL | https://www.marine.csiro.au/ipt/ | ||||||||||||||
Node | OBIS Australia | ||||||||||||||
Published | 2022-08-09 05:46 | ||||||||||||||
First registered | 2020-06-24 11:47 | ||||||||||||||
Abstract | A dataset describing the microbial pro- and eukaryotic diversity along a 7,000-km transect from the Antarctic ice edge to the equator in the South Pacific Ocean. Water samples were collected from Niskin bottles from CTD deployments reaching depths of 6000m. Using the World Register of Marine Species (WoRMS), the identification data has been tested and resolved to the lowest possible rank. Occurrence records where the taxa have only been resolved to kingdom have been removed from this dataset on advice from BioPlatforms as the identifications are not very robust. Note on data download/processing: Data downloaded from Australian Microbiome Initiative via Bioplatforms Australia Data Portal on 17 June 2022. The search filter applied to download data from Bioplatforms Australia Data portal are stored in the Darwin Core property (identificationRemarks). Taxonomy is assigned according to the taxonomic database (SILVA 138) and method (Sklearn) which is stored in the Darwin Core Extension DNA derived data property (otu_db). Prefix were removed from the taxonomic names as shown in the example (e.g. d__Bacteria to Bacteria). Scientific name is assigned to the valid name available from the highest taxonomic rank. This collection is published as Darwin Core Occurrence, so the event level measurements need to be replicated for every occurrence. Instead of data replication, the event level eMoF data are made available separately at https://www.marine.csiro.au/data/services/obisau/emof_export.cfm?ipt_resource=bioplatforms_mm_in2016_v03 | ||||||||||||||
Citation | When using Australian Microbiome Initiative data, please acknowledge the Consortium and Bioplatforms Australia support using the following wording: We would like to acknowledge the contribution of the Marine Microbes (MM) and Biomes of Australian Soil Environments (BASE) projects, through the Australian Microbiome Initiative in the generation of data used in this publication. The Australian Microbiome Initiative is supported by funding from Bioplatforms Australia through the Australian Government National Collaborative Research Infrastructure Strategy (NCRIS). | ||||||||||||||
Rights | This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC) 4.0 License | ||||||||||||||
Keywords | occurrence, occurrence | ||||||||||||||
Contacts |
|
Occurrence records | 3,875,871 | |
Species level | 45,201 |
|
Absence records | 0 | |
Event records | 0 | |
MoF records | 0 | |
Sequence records | 4,583,637 | |
Species | 313 | |
Taxa | 1,023 | |
Time range | 2016 - 2016 |
This dataset has appeared in 2,530 downloads in 2024, with a total of 6,503,864,885 records.
Dropped records | 707,766 |
|
Not marine | 17 |
|
No WoRMS match | 707,749 |
|
No coordinates | 0 |
|
Zero coordinates | 0 |
|
Marine unsure | 61,483 |
|
No accepted name available | 4,412 |
|
Field | Missing | Invalid | |
---|---|---|---|
scientificNameID | 752,341 | 0 |
|
Records on land | 0 |
|
More than 20 km from shore | 0 |
|
Depth exceeds bathymetric depth | 1,658 |
|
Scientific name | Records |
---|---|
Alphaproteobacteria
Phylum Proteobacteria > Class Alphaproteobacteria |
855,713 |
Syndiniales
Phylum Myzozoa > Class Dinophyceae |
484,864 |
Bacteria
|
360,502 |
Thermoplasmata
Phylum Euryarchaeota > Class Thermoplasmata |
316,580 |
Nitrosopumilaceae
Phylum Thaumarchaeota > Class Thaumarchaeota incertae sedis |
182,351 |
Dinophyceae Fritsch, 1927
Phylum Myzozoa > Class Dinophyceae |
162,378 |
Cyanobacteria Stanier ex Cavalier-Smith, 2002
Phylum Cyanobacteria |
153,420 |
Pseudomonadales
Phylum Proteobacteria > Class Gammaproteobacteria |
125,168 |
Amoebophrya Koeppen, 1894
Phylum Myzozoa > Class Dinophyceae |
122,910 |
Rhodospirillales
Phylum Proteobacteria > Class Alphaproteobacteria |
74,722 |
Barcode region | Occurrence records |
---|---|
16S rRNA | 2,620,695 |
18S rRNA | 1,255,176 |
Name | OceanExpert ID |
---|---|
CSIRO Oceans and Atmosphere Information and Data Centre, Hobart | 17014 |
CSIRO National Collections and Marine Infrastructure | 20942 |