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Taxonomy browser (Citrus sinensis)

Citrus sinensis

Taxonomy ID: 2711 (for references in articles please use NCBI:txid2711)
current name
Citrus sinensis (L.) Osbeck, 1765
Genbank common name: sweet orange
NCBI BLAST name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Citrus × sinensis
common name(s) Valencia orange, apfelsine, naranja, navel orange
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
   Entrez records   
Database name Subtree links Direct links
Nucleotide 285,035 285,032
Protein 253,982 253,982
Structure 20 20
Genome 1 1
Popset 277 277
GEO Datasets 1,024 1,024
PubMed Central 5,475 5,475
Gene 39,614 39,614
SRA Experiments 1,970 1,970
Protein Clusters 72 72
Identical Protein Groups 201,964 201,964
BioProject 215 215
BioSample 2,261 2,261
Assembly 16 16
PubChem BioAssay 49 49
Taxonomy 2 1

Comments and References:

image:Citrus sinensis
Tanaka T 1954
Tanaka T. 1954. Species problem in Citrus: a critical study of wild and cultivated units of Citrus, based upon field studies in their native homes. Revisio Aurantiacearum IX. Japanese Society for the Promotion of Science, Tokyo. 152 pp.

Genome Information

Go to NCBI genomic BLAST page for Citrus sinensis
Genome view: 10 chromosomes
Names 1 2 3 4 5 6 7 8 9 Pltd

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Citrus sinensis taxonomy taxonomy/phylogenetic Arctos Specimen Database
Citrus sinensis (L.) Osbeck taxonomy/phylogenetic Encyclopedia of life
3 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2614208508: Citrus sinensis Ridge Pineapple organism-specific Integrated Microbial Genomes
Citrus sinensis (L.) Osbeck taxonomy/phylogenetic Integrated Taxonomic Information System
Citrus sinensis taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Citrus sinensis taxonomy/phylogenetic Plants of the World Online
Citrus sinensis taxonomy/phylogenetic The International Plant Names Index
Citrus sinensis (L.) Osbeck taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
WebScipio: Citrus sinensis organism-specific WebScipio - eukaryotic gene identification
diArk: Citrus sinensis organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

To hide organism modifiers click here
strain
Valencia cultivar Valencia [5 132 118 65691 5 200822 171] Valencia orange cultivar Valencia [5 132 118 65691 5 200822 171] Washington Navel cultivar Washington navel [25 10 27225 2 3]
variety
Navel Late cultivar Navel Late [4 2 2] Navel-Late cultivar Navel Late [4 2 2] Pera cultivar Pera [20 17] valencia late cultivar Valencia Late [26 3 17]
cultivar
'BH' [1 357] 'Washington' navel orange [13 12700 5 18] Anliu [2 2] BT2 [1 10 1]
Baladi seeded orange [1] Barlerin [1 1] Bellamy Navel [3 3] Bingtang [13 7 1 10]
Biondo cadenera [1 32] Biondo cadenera, Tarocco nucellare 57-1E-I, Moro nucellare 58-8D-I [1 310] Biondo cadenera,Tarocco nucellare 57-1E-I,Moro nucellare 58-8D-I [1 310] Biondo comune [1]
Blood orange [1] Bloody Orange [1] Bonanza [3 3] Cara Cara [1 1357 9]
Darjeeling [1 3] Fengjie72-1 navel orange [1 1] Fruiter [1 1 1] Fukuhara [1 1]
Gannanzao [5 10 16] Grapefruit [1 1] Hamli [1] Hamlin [48 41 13 1 12 45]
Hamlin sweet orange [2] Hart's Tardiff Valencia [1 1] Harts Tardiff Valencia [3 2] Hong Anliu [1 267]
Honganliu [1 1] Hongkong Kumquat [1 1] Huangguogan [14 14] Jincheng [1 1]
Jingxian [2 2] Jiroft [1] Karatachi USDA [3 3] Lane Late Navel Orange [8 9 1 1]
Lane late [13 2 10] Lima [8 3 8] Madame Vinous [14 3728 2] Malta [1 1 1]
Maltaise barlerin [1 1] Maltaise demi sanguine [1 1] Moro [1 181 12 1] Moro Nucellare 58-8D-1 [5 5]
Moro blood orange [4 4] Moro nucellare 58-8D-I [1 169] Mousami [1 1 1] NHE [16 10 16]
NW [1 10 1] Navel [10 10 3] Navel Late [4 2 2] Navel orange [2 308 5]
Navel, Tarocco [2 1 2] Navelate [2 50 10 10 30] Navelina [5 2982 2] Neixiu [1 1 10 3]
New Hall [2 2] Newhall [3 53 7 12 1 92] Olinda [2 2 1] Olinda Valencia [4 3 1]
Orange of Heaven [8 5 6] Osbeck [3 3] Osbeck var. Ridge Pineapple [2 176] Parent Washington Navel [1 40 12907]
Pera [20 17] Petropolis [3 3] Pinalate [27 1 27] Ponkan cultivar Ponkan [2 61 3 18 5 12 95] of Citrus reticulata
RHRL-124 [1] Ridge Pineapple [1 1 6080] Ridge Pineapple sweet orange [1 1 12574 51718] Ruby [6 16713 1]
SO3 [1 10 1] Sanguine [1 1] Shahsavari [1 1] Shamouti [1 1 1]
Sweet orange [10 3 1] Sweet orange Valencia - 2 [8 8 4] TCPS1 [1 10 1] Tarocco [39 16 3 10 33]
Tarocco (Sciara) [1 168] Tarroco [1 1 1] Thompson navel [1 1] Trifoliate orange [1 1]
Trovita [5 752 5] UKXC [1 10 1] Valencia [5 132 118 65691 5 200822 171] Valencia Late [26 3 17]
Valencia orange cultivar Valencia [5 132 118 65691 5 200822 171] Valencia sweet orange [5 50 18 48891 200748] Vaniglia [2 1] Vaniglia Sanguigno [2 13 2090 5 6]
Washington [6 5 2] Washington navel [25 10 27225 2 3] Washington navel orange [13 12700 5 18] White Khalily [1]
White Khalily orange [1] Xinguotiancheng [1 1] Xuedan [1 1] Zong Cheng [1 1]
fukuhara orange [1 1] pineapple orange [3 2 3] shatinyu [1 1] sinensis Baladi [1]
torovita [1 1]
isolate
19F4-3 [1 1 1] 4 [3 1 3] 9 [4 1 4] ANGTER35 [1 1]
Anliu [1] BO-5 [1] BPTPS119 [1 2 87 1] BSO-2 [1]
C1 [1 1] C10 [1 1] C12 [1] C13 [1 1]
C15 [1 1 1] C8 [1 1] C9 [1] CHM0601 [1 1]
CHM0650 [1 1] CHM0669 [1 1 1] CM31 [2 2] CSIN-L1 [2 2]
Cara [1 3] CitCAT1 [1 1] CitCAT2 [1 1] CsLHS1 [1 1]
CsMDx1 [1] CsMDx10 [1] CsMDx2 [1] CsMDx3 [1]
CsMDx4 [1] CsMDx5 [1] CsMDx6 [1] CsMDx7 [1]
CsMDx8 [1] CsMDx9 [1] FUS3 [1 1] HIT135 [1 1 1]
HZAU_DHSO_2021 [1 10] ITS11IIC_sinensis [1 1] ITSC_sinensis [1 1] JNCRIHSO [1]
JNCRIWNO [1] LS 3-4 [1 1] MIL0766 [1 1 1] MIL1687 [1 1]
Newhall [1 8] Noemi-NM1 [1 1 1] Noemi-NM2 [1 1 1] Noemi-nTcs4 [1 1]
Noemi-nTcs6x [1 1] OGA0281 [1] RM11_5 [1] RM13_Hh1 [3]
RT1 [1 1] RT10 [1] RT11 [1] RT12 [1 1]
RT2 [1] RT3 [1] RT4 [1 1] RT5 [1 1]
RT6 [1 1] RT7 [1] RT8 [1 1] RT9 [1 1]
SHA0474 [1 1 1] SO-1 [1] TMP30 [1 1] Valencia [1]
WKO-3 [1] a27 [1] h5 [1] kk-22 [1 1]
kk22 [1 1] mixed field population [1 972]
sub-species
Karatachi USDA cultivar Karatachi USDA [3 3] Navel orange cultivar Navel orange [2 308 5] Ponkan cultivar Ponkan [2 61 3 18 5 12 95] of Citrus reticulata
specimen-voucher
22 [3 3 2] CRC371 [8 5 6] CRC3801 [8 5 6] CRC3858 [3 2 3]
CRC950 [8 3 8] G60 [2 2 1] HZAU2004137 [2 2 1] IC 558164 [5 4]
LISE:96440 [1 2 87] PS1613MT01 [3 2] RJB tubeno 23 [8 8 4] SRA18 [4 3 1]
THS:77977 [3] TJB384 [1 1 1] U.S.Horticultural Research Lab. Fort Pierce FL 34945 [2 176] WTFRC10032732 [1 85]
Y.Liu 1056 (HZAU) [1 1]
authority
Citrus sinensis (L.) Osbeck [14 7 11]
ecotype
Citrus sinensis [2 2 2] Citurs sinensis [1 1 1]
bio-material
AHP_Lot_3729 [3] ASINC:X1 [1 1] ASINC:X2 [1 1] ASINC:X3 [1 1]
ASINC:X4 [1 1] ASINC:X5 [1 1] BIRDI:SH-41 [1 1] BIRDI:SH-O1 [1 1]
BIRDI:SH-O33 [1 1] BIRDI:SH-O35 [1 1] BIRDI:SH-O5 [1 1] PQFC:F75 [1 1]
SOFRI:STG-14 [1 1]

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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