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txid59732[Organism:exp] - GEO DataSets - NCBI

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Items: 16

Select item 2002427851.

Analysis of differential gene expression in the degradation of doxycycline by Chryseobacterium sp. WX1

(Submitter supplied) We isolated an efficient doxycycline degrading strain Chryseobacterium sp. WX1. To investigate gene expression patterns during doxycyclinedegradation by strain WX1, we conducted a comparative transcriptomic analysis using cultures of strain WX1 with and without doxycycline addition. The RNA-Seq data revealed that 90.44-96.56% of the reads mapped to the genome of Chryseobacterium sp. WX1 across all samples. more...

Organism:: Chryseobacterium sp.

Type:: Expression profiling by high throughput sequencing

Platform:: GPL33742
6 Samples

Download data: TXT

Series

Accession:: GSE242785

ID:: 200242785

Select item 2001504222.

Dissecting the co-transcriptome landscape of plants and microbiota

(Submitter supplied) Interactions between plants and each neighboring microbial species are fundamental building blocks that collectively determine the structure and function of the plant microbiota, but the molecular basis of such interactions is poorly characterized. Here, we monocolonized Arabidopsis leaves with nine plant-associated bacteria from all major phyla of the plant microbiota and profiled co-transcriptomes of plants and bacteria. more...

Organism:: Exiguobacterium sp. Leaf187; Plantibacter sp. Leaf1; Rhizobium sp. Leaf155; Acinetobacter sp. Leaf130; Arthrobacter sp. Soil763; Flavobacterium sp. Root935; Arabidopsis thaliana; Pedobacter sp. Leaf176; Burkholderia sp. Leaf177; Chryseobacterium sp. Leaf404

Type:: Expression profiling by high throughput sequencing

10 related Platforms
125 Samples

Download data: FNA, TXT

Series

Accession:: GSE150422

ID:: 200150422

SRA Run Selector

Select item 1000337423.

Illumina NovaSeq 6000 (Chryseobacterium sp.)

Organism:: Chryseobacterium sp.

1 Series
6 Samples

Platform

Accession:: GPL33742

ID:: 100033742

Select item 1000285254.

Illumina HiSeq 3000 (Chryseobacterium sp. Leaf404)

Organism:: Chryseobacterium sp. Leaf404

1 Series
6 Samples

Platform

Accession:: GPL28525

ID:: 100028525

Select item 3077704735.

WX1 cells, with 50 mg/L doxycycline addition,rep3

Organism:: Chryseobacterium sp.

Source name:: WX1

Platform:: GPL33742
Series:: GSE242785

Sample

Accession:: GSM7770473

ID:: 307770473

SRA Run Selector

Select item 3077704726.

WX1 cells, with 50 mg/L doxycycline addition,rep2

Organism:: Chryseobacterium sp.

Source name:: WX1

Platform:: GPL33742
Series:: GSE242785

Sample

Accession:: GSM7770472

ID:: 307770472

SRA Run Selector

Select item 3077704717.

WX1 cells, with 50 mg/L doxycycline addition,rep1

Organism:: Chryseobacterium sp.

Source name:: WX1

Platform:: GPL33742
Series:: GSE242785

Sample

Accession:: GSM7770471

ID:: 307770471

SRA Run Selector

Select item 3077704708.

WX1 cells, without doxycycline addition,rep3

Organism:: Chryseobacterium sp.

Source name:: WX1

Platform:: GPL33742
Series:: GSE242785

Sample

Accession:: GSM7770470

ID:: 307770470

SRA Run Selector

Select item 3077704699.

WX1 cells, without doxycycline addition,rep2

Organism:: Chryseobacterium sp.

Source name:: WX1

Platform:: GPL33742
Series:: GSE242785

Sample

Accession:: GSM7770469

ID:: 307770469

SRA Run Selector

Select item 30777046810.

WX1 cells, without doxycycline addition,rep1

Organism:: Chryseobacterium sp.

Source name:: WX1

Platform:: GPL33742
Series:: GSE242785

Sample

Accession:: GSM7770468

ID:: 307770468

SRA Run Selector

Select item 30455024311.

Leaf404_col_3 TN_B_050

Organism:: Chryseobacterium sp. Leaf404

Source name:: Bacteria isolated from Arabidopsis thaliana

Platform:: GPL28525
Series:: GSE150422

Sample

Accession:: GSM4550243

ID:: 304550243

SRA Run Selector

Select item 30455023512.

Leaf404_vitro_3 TN_B_042

Organism:: Chryseobacterium sp. Leaf404

Source name:: Bacteria isolated from Arabidopsis thaliana

Platform:: GPL28525
Series:: GSE150422

Sample

Accession:: GSM4550235

ID:: 304550235

SRA Run Selector

Select item 30455021613.

Leaf404_vitro_2 TN_B_023

Organism:: Chryseobacterium sp. Leaf404

Source name:: Bacteria isolated from Arabidopsis thaliana

Platform:: GPL28525
Series:: GSE150422

Sample

Accession:: GSM4550216

ID:: 304550216

SRA Run Selector

Select item 30455021514.

Leaf404_vitro_1 TN_B_022

Organism:: Chryseobacterium sp. Leaf404

Source name:: Bacteria isolated from Arabidopsis thaliana

Platform:: GPL28525
Series:: GSE150422

Sample

Accession:: GSM4550215

ID:: 304550215

SRA Run Selector

Select item 30455020215.

Leaf404_col_2 TN_B_009

Organism:: Chryseobacterium sp. Leaf404

Source name:: Bacteria isolated from Arabidopsis thaliana

Platform:: GPL28525
Series:: GSE150422

Sample

Accession:: GSM4550202

ID:: 304550202

SRA Run Selector

Select item 30455019816.

Leaf404_col_1 TN_B_005

Organism:: Chryseobacterium sp. Leaf404

Source name:: Bacteria isolated from Arabidopsis thaliana

Platform:: GPL28525
Series:: GSE150422

Sample

Accession:: GSM4550198

ID:: 304550198

SRA Run Selector

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db=gds|term=txid59732[Organism:exp]|query=1|qty=12|blobid=MCID_66d828806f9d196c45bfbc06|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?

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