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LOC112238726 glutamate receptor ionotropic, NMDA 2C-like [Oncorhynchus tshawytscha (Chinook salmon)] - Gene - NCBI
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LOC112238726 glutamate receptor ionotropic, NMDA 2C-like [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112238726, updated on 18-Jun-2024

Summary

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Gene symbol
LOC112238726
Gene description
glutamate receptor ionotropic, NMDA 2C-like
See related
Ensembl:ENSOTSG00005014221
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC112238726 in Genome Data Viewer
Location:
chromosome: LG24
Exon count:
16
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG24 NC_056452.1 (22585339..22644921)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Unplaced Scaffold NW_020129682.1 (19678..93974, complement)

Linkage Group LG24 - NC_056452.1Genomic Context describing neighboring genes Neighboring gene guanine nucleotide-binding protein subunit alpha-13-like Neighboring gene regulator of G-protein signaling 9-like Neighboring gene carbonic anhydrase-related protein 10-like Neighboring gene carbonic anhydrase-related protein 10-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NMDA glutamate receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in excitatory postsynaptic potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in long-term synaptic potentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic transmission, glutamatergic IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of NMDA selective glutamate receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutamate receptor ionotropic, NMDA 2C-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056452.1 Reference Otsh_v2.0 Primary Assembly

    Range
    22585339..22644921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042305229.1 → XP_042161163.1  glutamate receptor ionotropic, NMDA 2C-like

    UniProtKB/TrEMBL
    A0A8C8F7C2
    Related
    ENSOTSP00005030726.2, ENSOTST00005033266.2
    Conserved Domains (2) summary
    cd13718
    Location:382 → 783
    PBP2_iGluR_NMDA_Nr2; The ligand-binding domain of the NR2 subunit of ionotropic NMDA (N-methyl-D-aspartate) glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    cd06378
    Location:12 → 366
    PBP1_iGluR_NMDA_NR2; N-terminal leucine-isoleucine-valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family
Nucleotide Protein
Heading Accession and Version

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