PANTHER Publications
How to cite PANTHER
- Always cite
PANTHER: Making genome-scale phylogenetics accessible to all
Paul D. Thomas, Dustin Ebert, Anushya Muruganujan, Tremayne Mushayahama, Laurent-Philippe Albou and Huaiyu Mi
Protein Society. 2022;31(1):8-22. doi:10.1002/pro.4218
- Enrichment test, over-representation test tools
Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0)
Huaiyu Mi, Anushya Muruganujan, J Xiaosong Huang, Dustin Ebert, Caitlin Mills, Xinyu Guo and Paul D Thomas
Nat Protoc. 2019 Mar;14(3):703-721. doi: 10.1038/s41596-019-0128-8
- PANTHER pathway
PANTHER Pathway: An Ontology-Based Pathway Database Coupled with Data Analysis Tools
Huaiyu Mi and Paul Thomas
Protein Networks and Pathway Analysis. Methods in Molecular Biology (Methods and Protocols), vol 563.
- GIGA - PANTHER tree building algorithm
GIGA: a simple, efficient algorithm for gene tree inference in the genomic age
Paul D Thomas
BMC Bioinformatics 2010, 11:312
- Coding SNP analysis tool
PANTHER-PSEP: predicting disease-causing genetic variants using position-specific evolutionary preservation
Haiming Tang and Paul D. Thomas
Bioinformatics (2016) doi: 10.1093/bioinformatics/btw222
- TreeGrafter tool for classifying user-specified sequences
TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations
Tang H, Finn RD, Thomas PD.
Bioinformatics. 2019 Feb 1;35(3):518-520. doi: 10.1093/bioinformatics/bty625. PMID: 30032202; PMCID: PMC6361231.
