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Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics - Wikidata

Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics (Q28553074)

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Language	Label	Description	Also known as
English	Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics	scientific article

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scholarly article

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Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics (English)

0 references

0 references

transcriptomics

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

Parastagonospora nodorum

object named as

Parastagonospora nodorum

1 reference

based on heuristic

inferred from title

2

object named as

Kar-Chun Tan

author given names

Kar-Chun

author last names

Tan

1 reference

PubMed publication ID

10 November 2023

object named as

Kejal Dodhia

4

author given names

Kejal

author last names

Dodhia

1 reference

PubMed publication ID

10 November 2023

object named as

Robert A Syme

1

author given names

Robert A

author last names

Syme

1 reference

PubMed publication ID

10 November 2023

Marcus L Hastie

object named as

Marcus Hastie

6

author given names

Marcus

author last names

Hastie

1 reference

PubMed publication ID

10 November 2023

object named as

James K Hane

3

author given names

James K

author last names

Hane

1 reference

PubMed publication ID

10 November 2023

Simon R. Ellwood

object named as

Simon R Ellwood

8

author given names

Simon R

author last names

Ellwood

1 reference

PubMed publication ID

10 November 2023

author name string

Thomas Stoll

5

author given names

Thomas

author last names

Stoll

1 reference

PubMed publication ID

10 November 2023

Eiko Furuki

7

author given names

Eiko

author last names

Furuki

1 reference

PubMed publication ID

10 November 2023

Angela H Williams

9

author given names

Angela H

author last names

Williams

1 reference

PubMed publication ID

10 November 2023

Yew-Foon Tan

10

author given names

Yew-Foon

author last names

Tan

1 reference

PubMed publication ID

10 November 2023

Alison C Testa

11

author given names

Alison C

author last names

Testa

1 reference

PubMed publication ID

10 November 2023

Jeffrey J Gorman

12

author given names

Jeffrey J

author last names

Gorman

1 reference

PubMed publication ID

10 November 2023

Richard P Oliver

13

author given names

Richard P

author last names

Oliver

1 reference

PubMed publication ID

10 November 2023

language of work or name

0 references

publication date

2016

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11

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2

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e0147221

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copyright license

Creative Commons Attribution 4.0 International

3 February 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

describes a project that uses

object named as

MIRA

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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The Pathogen-Host Interactions database (PHI-base): additions and future developments

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19 March 2017

Sizing up Septoria

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19 March 2017

Web Apollo: a web-based genomic annotation editing platform

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19 March 2017

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

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19 March 2017

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19 March 2017

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19 March 2017

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19 March 2017

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Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum

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19 March 2017

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7 April 2017

RNA-seq-Based Gene Annotation and Comparative Genomics of Four Fungal Grass Pathogens in the Genus Zymoseptoria Identify Novel Orphan Genes and Species-Specific Invasions of Transposable Elements

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A genome-wide survey of the secondary metabolite biosynthesis genes in the wheat pathogen Parastagonospora nodorum

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29 September 2017

Effectors as tools in disease resistance breeding against biotrophic, hemibiotrophic, and necrotrophic plant pathogens

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Resequencing and comparative genomics of Stagonospora nodorum: sectional gene absence and effector discovery

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Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence

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29 September 2017

A comparative analysis of the heterotrimeric G-protein Gαあるふぁ, Gβべーた and Gγがんま subunits in the wheat pathogen Stagonospora nodorum

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29 September 2017

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

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The human respiratory syncytial virus nonstructural protein 1 regulates type I and type II interferon pathways

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29 September 2017

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

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29 September 2017

Faster SEQUEST searching for peptide identification from tandem mass spectra

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29 September 2017

The transcription factor StuA regulates central carbon metabolism, mycotoxin production, and effector gene expression in the wheat pathogen Stagonospora nodorum

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29 September 2017

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29 September 2017

Fungal effector proteins

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29 September 2017

Mannitol is required for asexual sporulation in the wheat pathogen Stagonospora nodorum (glume blotch).

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3 June 2018

Novel necrotrophic effectors from Stagonospora nodorum and corresponding host sensitivities in winter wheat germplasm in the southeastern United States.

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21 January 2018

Pathogenicity of Stagonospora nodorum requires malate synthase

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21 January 2018

Trehalose biosynthesis is involved in sporulation of Stagonospora nodorum

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21 January 2018

Mannitol 1-phosphate metabolism is required for sporulation in planta of the wheat pathogen Stagonospora nodorum

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21 January 2018

The Mak2 MAP kinase signal transduction pathway is required for pathogenicity in Stagonospora nodorum.

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21 January 2018

Investigating the role of calcium/calmodulin-dependent protein kinases in Stagonospora nodorum

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21 January 2018

The disruption of a Galpha subunit sheds new light on the pathogenicity of Stagonospora nodorum on wheat

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21 January 2018

Transcriptome analysis of Stagonospora nodorum: gene models, effectors, metabolism and pantothenate dispensability

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21 January 2018

Genetic and Physical Mapping of a Gene Conditioning Sensitivity in Wheat to a Partially Purified Host-Selective Toxin Produced by Stagonospora nodorum.

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21 January 2018

A signaling-regulated, short-chain dehydrogenase of Stagonospora nodorum regulates asexual development.

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Cutadapt removes adapter sequences from high-throughput sequencing reads

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Rapid and accurate peptide identification from tandem mass spectra

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Semi-supervised learning for peptide identification from shotgun proteomics datasets.

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Quantitative proteomic analysis of G-protein signalling in Stagonospora nodorum using isobaric tags for relative and absolute quantification

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21 January 2018

Ho endonuclease cleaves MAT DNA in vitro by an inefficient stoichiometric reaction mechanism

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based on heuristic

inferred from PubMed ID database lookup

Delta-aminolaevulinic acid synthesis is required for virulence of the wheat pathogen Stagonospora nodorum

1 reference

https://pubmed.ncbi.nlm.nih.gov/26840125

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Proteomic techniques for plant-fungal interactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/26840125

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0147221

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2016PLoSO..1147221S

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PubMed publication ID

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